LOCUS BC028127 2124 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chromosome 10 open reading frame 53, mRNA (cDNA clone
MGC:40171 IMAGE:5164374), complete cds.
ACCESSION BC028127
VERSION BC028127.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2124)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2124)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: d Column: 19
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2124
/db_xref="H-InvDB:HIT000040453"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40171 IMAGE:5164374"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2124
/gene="C10orf53"
/db_xref="GeneID:282966"
/db_xref="HGNC:HGNC:27421"
CDS 13..486
/gene="C10orf53"
/codon_start=1
/product="chromosome 10 open reading frame 53"
/protein_id="AAH28127.1"
/db_xref="GeneID:282966"
/db_xref="HGNC:HGNC:27421"
/translation="MPKNAVVILRYGPYSAAGLPVEHHTFRLQGLQAVLAIDGHEVIL
EKIEDWNVVELMVNEEVIFHCNIKDLEFGKLTPSSDKRTTSSSRLTFHQLSSPCGMKV
SPLQQFPQKTQDLTCIVLAQIGSCIHFQTNLCDLGWPGLDHMLISGLEKRGTQPY"
BASE COUNT 518 a 597 c 469 g 540 t
ORIGIN
1 ggaggcctgg cgatgcccaa gaacgcagtg gtcatcctgc gctatgggcc ctacagcgcg
61 gcaggcctac cggtggagca ccacaccttc cgcctgcagg gcctgcaagc tgtgttggcc
121 atagatggac atgaggtcat cctagagaag atagaagact ggaatgtggt ggaactcatg
181 gtgaatgaag aagtcatctt ccactgcaac attaaggact tggagtttgg caagctcacc
241 ccaagtagtg acaagaggac caccagcagc tccaggctga catttcacca gcttagcagc
301 ccgtgtggga tgaaagtttc tcctttgcaa cagttcccac aaaagaccca ggacctgact
361 tgtattgtat tggcccagat tggatcatgt atccatttcc aaaccaatct ttgtgacctg
421 ggttggccag gcctggatca catgctcatt tctggactag agaagagggg aactcagccc
481 tactgaaatc gacaggacag attgtgggaa aggggttcat ttcacaaaag gaaaatggtg
541 ggtctgtttc cagaataagg gtgaatagat gctgagtccc ccaaaacaaa aattgtccca
601 catctcccga acctctccag ctagatgtcc cacaggcaac ctgtggcaaa cccaacatga
661 ttctccccag ctctgagtct ctacaactgt attcccgtgt tgaagttatg atcgatgaac
721 tacttactca atttgggaac ttggggacag ccctcaccat cttctgaagt gaactgatct
781 gcccttttct caacaatgcc agtgctttcg ccctgctttg ggatttggca tctcttcccc
841 aagctgttta actggattcc tatctcgtta ctctgtctcc attatctcct cctgcaaacc
901 actcgccaca tggctgctaa aatcatcttt cccaagcatt gatctgcccg tttcttccct
961 gtgcatttat tttttggctt tccattgtca tgttatattt ggggacctct ccacactgtg
1021 agtcttggtg gaaacagagt cttgacatga gcaagtaacc catgctccac caggggaatg
1081 cactggccct agacctcaac tctagggctt gtggcaaaag gatggtaaga gaaggaatga
1141 tgtgttctgt ggctctggca gcggcagcta catccagctt ctggggtcag ccagggcaat
1201 catgccagct acaacatcca gcatctagca aggttaatgg ggtaagctgc cgtttctggc
1261 ctcggcagca tgaccatggg ctccttccag gcctggtttt gtggtatgac acggcctgaa
1321 cctctggctt cagagcctct ccttgtgtcc ctgtatttta tccagcctgc ttctccagcc
1381 ttctaggcca gtccttgaga tcctggtttc ctctcaaaca attccttttg agcccatctc
1441 agccagaacc agctctgttg ctcacagcta taaaccttga ctgagacact cctgtgtggt
1501 ttcaggagaa aatttaaact cttcagccag gcataagaga ccctttatga tctgagcctc
1561 actcacctgt tccctggccc actgcccacc ccacagccct aagtgattag caaagcaggc
1621 ctttcacatt tacaggcctc tgccctcctg gcatcccctt ctccacctgg taaatgctgc
1681 ccaactcaag cagcaactcc taccataatc tttccccttc tcccttctct cccagcagaa
1741 cggtgggctc ccctctctgg ttccctgcag ccttgctctg cataggctct gatgaatgcc
1801 tggcacccta tatctgtgtg tgtgtgtgtg tgtgtgtgtg tgtctgtgtg tcttgggagg
1861 gtcatagagc tcctcaaagc agcagcatgt cacctccccc acgccccacg tctttgtgcc
1921 tcctacccta gagcccagca tagcacttgt cccatagtga gccctcaaca aacacacagt
1981 taacaaagga tggcaatcaa tgctccatcc tgccagccct ggacacaaca cccaacagtt
2041 gctcaagggc cagtgtggca ttcttactta ataaaacatg ttggaaaatg aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaa
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