LOCUS BC027993 2196 bp mRNA linear HUM 24-NOV-2004
DEFINITION Homo sapiens calpain 9, mRNA (cDNA clone MGC:39972 IMAGE:5173512),
complete cds.
ACCESSION BC027993
VERSION BC027993.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2196)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2196)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5729757.
FEATURES Location/Qualifiers
source 1..2196
/db_xref="H-InvDB:HIT000258998"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39972 IMAGE:5173512"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2196
/gene="CAPN9"
/gene_synonym="GC36"
/gene_synonym="nCL-4"
/db_xref="GeneID:10753"
/db_xref="MIM:606401"
CDS 65..1948
/gene="CAPN9"
/gene_synonym="GC36"
/gene_synonym="nCL-4"
/codon_start=1
/product="CAPN9 protein"
/protein_id="AAH27993.1"
/db_xref="GeneID:10753"
/db_xref="MIM:606401"
/translation="MPYLYRAPGPQAHPVPKDARITHSSGQSFEQMRQECLQRGTLFE
DADFPASNSSLFYSERPQIPFVWKRPGFWQHSEWLDVVIDDRLPTFRDRLVFLHSADH
NEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKA
LKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQVSFRGQRIELIRIRNPWG
QVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFQDFKAHFDKVEICNLTPD
ALEEDAIHKWEVTVHQGSWVRGSTAGGCRNFLDTFWTNPQIKLSLTEKDEGQEECSFL
VALMQKDRRKLKRFGANVLTIGYAIYECPDKDEHLNKDFFRYHASRARSKTFINLREV
SDRFKLPPGEYILIPSTFEPHQEADFCLRIFSEKKAITRDMDGNVDIDLPEPPKPTPP
DQETEEEQRFRALFEQVAGEDMEVTAEELEYVLNAVLQKKKDIKFKKLSLISCKNIIS
LMDTSGNGKLEFDEFKVFWDKLKQWINLFLRFDADKSGTMSTYELRTALKAAGFQLSS
HLLQLIVLRYADEELQLDFDDFLNCLVRLENASRVFQALSTKNKEFIHLNINEFIHLT
MNI"
BASE COUNT 593 a 551 c 571 g 481 t
ORIGIN
1 gctcgcttct tcactttctt ttccatccac tgccggaccc aagccagcct tccagggagc
61 agccatgcct tacctctacc gggccccagg gcctcaggca cacccggttc ccaaggacgc
121 ccggatcacc cactcctcag gccagagctt tgagcaaatg aggcaggagt gcctgcagag
181 aggcaccctg tttgaggatg cagacttccc agccagcaat tcctccctgt tctacagtga
241 gaggccgcag atcccctttg tgtggaaacg accagggttc tggcagcaca gtgagtggct
301 ggacgtggtg atcgatgacc gcctgcccac cttcagggac cgcttggttt tcctccactc
361 tgccgaccac aacgagttct ggagcgcctt gctggaaaaa gcctacgcca agctaaatgg
421 gagctatgaa gctctgaagg gaggcagcgc catcgaggcc atggaagact tcactggggg
481 tgtggcagag accttccaaa ctaaagaggc ccccgagaac ttctatgaga ttctagagaa
541 ggctttgaag agaggctccc tgctgggctg cttcattgat accagaagtg ctgcagaatc
601 tgaggcccgg acgccgtttg gtcttattaa gggtcatgcc tacagtgtaa cgggaattga
661 ccaggtaagc ttccgaggcc agagaatcga gctcatccga atccggaacc cttggggcca
721 ggttgagtgg aacgggtcgt ggagcgacag ttctccggag tggcgttctg ttggtccagc
781 tgagcagaag cgtctgtgtc acactgctct ggatgatggg gaattctgga tggcatttca
841 ggacttcaag gcccactttg ataaagtgga gatctgcaac ctcactcccg atgccctgga
901 ggaagacgcg atccacaaat gggaggtgac ggtccatcag ggaagctggg ttcgcggctc
961 cacggctggg ggctgccgca atttcctgga taccttttgg accaatccac aaataaaatt
1021 gtctctgact gagaaagatg aggggcagga ggagtgtagt ttccttgtag ccctgatgca
1081 gaaagataga aggaaactca agagatttgg tgccaatgtg ctgacaatcg gctatgccat
1141 ttatgagtgc cctgacaaag acgaacacct gaacaaagac ttcttcagat accacgcttc
1201 tcgggccaga agcaagacgt tcatcaacct gagagaagtc tccgaccggt tcaagctgcc
1261 ccctggggag tacatcctga ttcccagcac ttttgagccc caccaggaag ctgatttctg
1321 tctgagaatc ttttcagaga aaaaagccat tacccgggat atggatggaa atgtagacat
1381 tgaccttcct gagcctccaa agccaactcc acctgaccag gagacagagg aggagcagcg
1441 gtttcgggct ctgtttgaac aagtcgctgg tgaggacatg gaggtgacag cagaggaact
1501 tgagtatgtt ttaaatgctg tgctgcaaaa gaaaaaggac atcaaattca agaagctaag
1561 cctgatctcc tgtaaaaaca tcatttccct gatggacacc agcggcaatg ggaagctgga
1621 gtttgatgaa ttcaaagtgt tctgggacaa gctgaagcag tggattaacc ttttccttcg
1681 gtttgatgct gacaagtccg gcaccatgtc tacctatgaa ctacggactg cactgaaagc
1741 tgcaggcttt cagctgagca gccacctcct gcagctgatt gtgctcaggt atgcggatga
1801 ggagctccag ctggacttcg atgacttcct caactgcctg gtccggctgg agaatgcgag
1861 ccgggtgttc caggctctca gtacaaagaa caaggagttc attcatctca atataaatga
1921 gttcatccat ttgacaatga acatctgagg ctgccttgta gagatgcagc ctgcccagct
1981 gaatcttggc ttctggacct tgaccttcag aacttctctt ggtgtggaac cattacgccc
2041 agggttcact cccctctcat cgtccggcct tctcccttca tcttgatctg ggaagaatga
2101 aatgaactca gctacactct ctgaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//