LOCUS BC027971 3292 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens brevican, mRNA (cDNA clone MGC:34716 IMAGE:5309663), complete cds. ACCESSION BC027971 VERSION BC027971.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3292) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3292) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 49 Row: p Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..3292 /db_xref="H-InvDB:HIT000040384" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34716 IMAGE:5309663" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3292 /gene="BCAN" /gene_synonym="BEHAB" /gene_synonym="CSPG7" /gene_synonym="MGC13038" /db_xref="GeneID:63827" /db_xref="HGNC:HGNC:23059" /db_xref="MIM:600347" CDS 141..2876 /gene="BCAN" /gene_synonym="BEHAB" /gene_synonym="CSPG7" /gene_synonym="MGC13038" /codon_start=1 /product="brevican" /protein_id="AAH27971.1" /db_xref="GeneID:63827" /db_xref="HGNC:HGNC:23059" /db_xref="MIM:600347" /translation="MAQLFLPLLAALVLAQAPAALADVLEGDSSEDRAFRVRIAGDAP LQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRGREAEVLVARGVRVKVNE AYRFRVALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFL YREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQ TPREACYGDMDGFPGVRNYGVVDPDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAY CQERGAEIATTGQLYAAWDGGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFL FPNQTGFPNKHSRFNVYCFRDSAQPSAIPEASNPASNPASDGLEAIVTVTETLEELQL PQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEFETQSMVPPTGFSEEEG KALEEEEKYEDEEEKEEEEEEEEVEDEALWAWPSELSSPGPEASLPTEPAAQEKSLSQ APARAVLQPGASPLPDGESEASRPPRVHGPPTETLPTPRERNLASPSPSTLVEAREVG EATGGPELSGVPRGESEETGSSEGAPSLLPATRAPEGTRELEAPSEDNSGRTAPAGTS VQAQPVLPTDSASRGGVAVVPASGDCVPSPCHNGGTCLEEEEGVRCLCLPGYGGDLCD VGLRFCNPGWDAFQGACYKHFSTRRSWEEAETQCRMYGAHLASISTPEEQDFINNRYR EYQWIGLNDRTIEGDFLWSDGVPLLYENWNPGQPDSYFLSGENCVVMVWHDQGQWSDV PCNYHLSYTCKMGLVSCGPPPELPLAQVFGRPRLRYEVDTVLRYRCREGLAQRNLPLI RCQENGRWEAPQISCVPRRPARALHPEEDPEGRQGRLLGRWKALLIPPSSPMPGP" BASE COUNT 677 a 1025 c 1008 g 582 t ORIGIN 1 ccacgcgtcc gctcgcgcag tctccgccgc agtctcagct gcagctgcag gactgagccg 61 tgcacccgga ggagaccccc ggaggaggcg acaaacttcg cagtgccgcg acccaacccc 121 agccctgggt agcctgcagc atggcccagc tgttcctgcc cctgctggca gccctggtcc 181 tggcccaggc tcctgcagct ttagcagatg ttctggaagg agacagctca gaggaccgcg 241 cttttcgcgt gcgcatcgcg ggcgacgcgc cactgcaggg cgtgctcggc ggcgccctca 301 ccatcccttg ccacgtccac tacctgcggc caccgccgag ccgccgggct gtgctgggct 361 ctccgcgggt caagtggact ttcctgtccc ggggccggga ggcagaggtg ctggtggcgc 421 ggggagtgcg cgtcaaggtg aacgaggcct accggttccg cgtggcactg cctgcgtacc 481 cagcgtcgct caccgacgtc tccctggcgc tgagcgagct gcgccccaac gactcaggta 541 tctatcgctg tgaggtccag cacggcatcg atgacagcag cgacgctgtg gaggtcaagg 601 tcaaaggggt cgtctttctc taccgagagg gctctgcccg ctatgctttc tccttttctg 661 gggcccagga ggcctgtgcc cgcattggag cccacatcgc caccccggag cagctctatg 721 ccgcctacct tgggggctat gagcaatgtg atgctggctg gctgtcggat cagaccgtga 781 ggtatcccat ccagacccca cgagaggcct gttacggaga catggatggc ttccccgggg 841 tccggaacta tggtgtggtg gacccggatg acctctatga tgtgtactgt tatgctgaag 901 acctaaatgg agaactgttc ctgggtgacc ctccagagaa gctgacattg gaggaagcac 961 gggcgtactg ccaggagcgg ggtgcagaga ttgccaccac gggccaactg tatgcagcct 1021 gggatggtgg cctggaccac tgcagcccag ggtggctagc tgatggcagt gtgcgctacc 1081 ccatcgtcac acccagccag cgctgtggtg ggggcttgcc tggtgtcaag actctcttcc 1141 tcttccccaa ccagactggc ttccccaata agcacagccg cttcaacgtc tactgcttcc 1201 gagactcggc ccagccttct gccatccctg aggcctccaa cccagcctcc aacccagcct 1261 ctgatggact agaggctatc gtcacagtga cagagaccct ggaggaactg cagctgcctc 1321 aggaagccac agagagtgaa tcccgtgggg ccatctactc catccccatc atggaggacg 1381 gaggaggtgg aagctccact ccagaagacc cagcagaggc ccctaggacg ctcctagaat 1441 ttgaaacaca atccatggta ccgcccacgg ggttctcaga agaggaaggt aaggcattgg 1501 aggaagaaga gaaatatgaa gatgaagaag agaaagagga ggaagaagaa gaggaggagg 1561 tggaggatga ggctctgtgg gcatggccca gcgagctcag cagcccgggc cctgaggcct 1621 ctctccccac tgagccagca gcccaggaga agtcactctc ccaggcgcca gcaagggcag 1681 tcctgcagcc tggtgcatca ccacttcctg atggagagtc agaagcttcc aggcctccaa 1741 gggtccatgg accacctact gagactctgc ccactcccag ggagaggaac ctagcatccc 1801 catcaccttc cactctggtt gaggcaagag aggtggggga ggcaactggt ggtcctgagc 1861 tatctggggt ccctcgagga gagagcgagg agacaggaag ctccgagggt gccccttccc 1921 tgcttccagc cacacgggcc cctgagggta ccagggagct ggaggccccc tctgaagata 1981 attctggaag aactgcccca gcagggacct cagtgcaggc ccagccagtg ctgcccactg 2041 acagcgccag ccgaggtgga gtggccgtgg tccccgcatc aggtgactgt gtccccagcc 2101 cctgccacaa tggtgggaca tgcttggagg aggaggaagg ggtccgctgc ctatgtctgc 2161 ctggctatgg gggggacctg tgcgatgttg gcctccgctt ctgcaacccc ggctgggacg 2221 ccttccaggg cgcctgctac aagcactttt ccacacgaag gagctgggag gaggcagaga 2281 cccagtgccg gatgtacggc gcgcatctgg ccagcatcag cacacccgag gaacaggact 2341 tcatcaacaa ccggtaccgg gagtaccagt ggatcggact caacgacagg accatcgaag 2401 gcgacttctt gtggtcggat ggcgtccccc tgctctatga gaactggaac cctgggcagc 2461 ctgacagcta cttcctgtct ggagagaact gcgtggtcat ggtgtggcat gatcagggac 2521 aatggagtga cgtgccctgc aactaccacc tgtcctacac ctgcaagatg gggctggtgt 2581 cctgtgggcc gccaccggag ctgcccctgg ctcaagtgtt cggccgccca cggctgcgct 2641 atgaggtgga cactgtgctt cgctaccggt gccgggaagg actggcccag cgcaatctgc 2701 cgctgatccg atgccaagag aacggtcgtt gggaggcccc ccagatctcc tgtgtgccca 2761 gaagacctgc ccgagctctg cacccagagg aggacccaga aggacgtcag gggaggctac 2821 tgggacgctg gaaggcgctg ttgatccccc cttccagccc catgccaggt ccctaggggg 2881 caaggccttg aacactgccg gccacagcac tgccctgtca cccaaatttt ccctcacacc 2941 ctgcgctccc gccaccacag gaagtgacaa catgacgagg ggtggtgctg gagtccaggt 3001 gacagttcct gaaggggctt ctgggaaata cctaggaggc tccagcccag cccaggccct 3061 ctccccctac cctgggcacc agatcttcca tcagggccgg agtaaatccc taagtgcctc 3121 aactgccctc tccctggcag ccatcttgtc ccctctattc ctctagggag cactgtgccc 3181 actctttctg ggttttccaa gggaatgggc ttgcaggatg gagtgtctgt aaaatcaaca 3241 ggaaataaaa ctgtgtatga gcccaggcaa aaaaaaaaaa aaaaaaaaaa aa //