LOCUS BC027951 2874 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens Cas scaffolding protein family member 4, mRNA (cDNA
clone MGC:34259 IMAGE:5205865), complete cds.
ACCESSION BC027951
VERSION BC027951.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2874)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2874)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: h Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55769584.
FEATURES Location/Qualifiers
source 1..2874
/db_xref="H-InvDB:HIT000040372"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34259 IMAGE:5205865"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2874
/gene="CASS4"
/gene_synonym="CAS4"
/gene_synonym="HEFL"
/gene_synonym="HEPL"
/db_xref="GeneID:57091"
/db_xref="HGNC:HGNC:15878"
CDS 152..2170
/gene="CASS4"
/gene_synonym="CAS4"
/gene_synonym="HEFL"
/gene_synonym="HEPL"
/codon_start=1
/product="CASS4 protein"
/protein_id="AAH27951.1"
/db_xref="GeneID:57091"
/db_xref="HGNC:HGNC:15878"
/translation="MKGTGIMDCAPKALLARALYDNCPDCSDELAFSRGDILTILEQH
VPESEGWWKCLLHGRQGLAPANRLQILTEVAADRPCPPFLRGLEEAPASSEETYQVPT
LPRPPTPGPVYEQMRSWAEGPQPPTAQVYEFPDPPTSARIICEKTLSFPKQAILTLPR
PVRASLPTLPSQVYDVPTQHRGPVVLKEPEKQQLYDIPASPKKAGLHPPDSQASGQGV
PLISVTTLRRGGYSTLPNPQKSEWIYDTPVSPGKASVRNTPLTSFAEESRPHALPSSS
STFYNPPSGRSRSLTPQLNNNVPMQKKLSLPEIPSYGFLVPRGTFPLDEDVSYKVPSS
FLIPRVEQQNTKPNIYDIPKATSSVSQAGKELEKAKEVSENSAGHNSSWFSRRTTSPS
PEPDRLSGSSSDSRASIVSSCSTTSTDDSSSSSSEESAKELSLDLDVAKETVMALQHK
VVSSVAGLMLFVSRKWRFRDYLEANIDAIHRSTDHIEESVREFLDFARGVHGTACNLT
DSNLQNRIRDQMQTISNSYRILLETKESLDNRNWPLEVLVTDSVQNSPDDLERFVMVA
RMLPEDIKRFASIVIANGRLLFKRNCEKEETVQLTPNAEFKCEKYIQPPQRETESHQK
STPSTKQREDEHSSELLKKNRANICGQVSSEFQVIEKGASIVTWSSGY"
BASE COUNT 792 a 734 c 677 g 671 t
ORIGIN
1 ctttttgatc gtttcccatg tgttgtcaga tagctccata gaattcagtt tctgagaacc
61 agccagaagc atgcagtgac attgcacaat ctgcctctga agctggagat actagctgca
121 gagctcaggg gagctgctcc acatcaccga catgaaggga acaggcatca tggactgtgc
181 gcccaaggca ctcctggcca gggcacttta tgacaactgc cctgactgct ctgacgagct
241 ggctttcagc agaggggaca tcctgaccat tctggagcaa cacgtgccag aaagcgaggg
301 ttggtggaag tgtttgctcc atgggaggca aggcctggcc cctgccaacc gcctccaaat
361 cctcacggag gtcgctgcag acaggccgtg ccccccattc ctgagaggcc tggaagaagc
421 tcctgccagc tcagaggaga cctatcaggt gcccactcta ccccgccctc ccactccagg
481 ccccgtttat gagcagatga ggagttgggc ggaggggccc cagcccccta ctgcccaagt
541 ctatgaattc cccgaccctc ccaccagtgc cagaatcatc tgtgaaaaga ctctcagctt
601 tccaaaacag gccatcctca cgcttcccag acctgtccgg gcctcactgc cgactctgcc
661 ttcccaggtg tatgacgtgc ctacccagca ccggggcccc gtggtcctga aggagccaga
721 gaagcagcag ttatatgaca taccagccag ccccaagaag gcaggactcc atcccccaga
781 cagccaagca agtgggcagg gtgttcccct gatatcagtg actaccttaa gaagaggcgg
841 ttacagcaca ttaccaaatc ctcagaaatc ggaatggatt tatgacactc cagtgtctcc
901 aggaaaggcc agcgtcagaa acacgcctct caccagcttt gcggaagaat caaggcccca
961 cgctctcccc agttccagct ccactttcta caatcctcca agtggcagat ccaggtccct
1021 cactccacaa ctgaataaca atgtgcccat gcagaaaaaa ctcagccttc cagaaattcc
1081 ttcttatggc tttcttgtac ccagaggcac atttcctttg gatgaagatg tcagctacaa
1141 ggttccttca agctttctga ttccccgagt ggaacagcag aacaccaagc ccaatattta
1201 tgacatccct aaagcaacgt cgagtgtttc tcaggctggg aaggagctgg agaaagccaa
1261 ggaggtgtca gagaattccg cgggccataa ttcctcatgg ttctccagac ggacaacttc
1321 cccatctcct gaaccggaca gattatcagg ttccagttct gacagcagag ctagcatcgt
1381 ttcctcgtgc tccaccacat ccaccgacga ctcctccagc tcttcctcgg aggagtcagc
1441 aaaggagctc tccttggacc tggatgtggc caaggagaca gtgatggctc tgcagcacaa
1501 ggtggtcagc tctgtcgctg gcctgatgct ctttgtcagc aggaagtgga gattccgaga
1561 ctatctggag gccaacattg atgcaatcca caggtccact gatcacatag aagaatctgt
1621 aagagaattt ctggattttg cccgaggagt ccatgggact gcctgtaacc tcactgacag
1681 taaccttcag aacagaattc gggaccagat gcagaccatc tccaactcct accgcatcct
1741 gcttgaaaca aaggaaagct tggataatcg caattggcct ctggaagttc ttgtgactga
1801 cagtgtccag aacagcccag atgaccttga gaggtttgtc atggtggcac ggatgcttcc
1861 agaagacatc aagaggtttg cctccattgt cattgccaat ggaaggctcc tttttaagcg
1921 gaactgtgaa aaggaagaga ctgtgcagtt gaccccaaat gcagaattta agtgtgaaaa
1981 atacatccag cctccccaaa gagaaactga atcacaccaa aagagtaccc cttccactaa
2041 gcaaagggaa gatgaacact cttctgaact attaaagaaa aatagggcaa atatctgtgg
2101 acaggtgagt tcagagttcc aagtgatcga aaaaggggct tcaattgtta cctggagtag
2161 tggctactaa gatgctgaga ctctttccat agtgtatagg ctttggggag acactggttc
2221 cattttctag aaaataaaat ttatgaaagt aaaattcttg atgaaatctt attaacaagt
2281 cagataaaga taggtcagca taggcagata ggtcagttga tttggatttc ttccgaaaac
2341 ttttggcgtt caagtttacc atattagaat taaaagggat ttttaaattt cttaaaaaat
2401 tattatttga gtagattttt aaaacctcac caccaagtct ccttgcattt ttgaaagtta
2461 taaatttagt cattctcagt gtgtttctta gcaacgaaag aggaagtaga aacattcttt
2521 caaattgccc atggtctgat cagcccccag acttcagcta ctcttagaaa tacttttctg
2581 aggctgggcc tggtggctta tgcctgtaat tccaacgctt tgggaggcca acgcaggagg
2641 atcccttgag gcaggagttt gagaccaggc tgggcaacat agtgagaccc cagctgtaca
2701 aaatttattt ttaaatatcc aggtgtagtg gctcatgcac ttgggagtct gagtgggggt
2761 atcccttgag accaggagtt tggggttgca gagagctatg atggtgccac tgcactccag
2821 ccttggtgac agagcaagag ctaatctcta aaaaaaaaaa aaaaaaaaaa aaaa
//