LOCUS BC027939 2005 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens sushi, nidogen and EGF-like domains 1, mRNA (cDNA
clone IMAGE:5201665), complete cds.
ACCESSION BC027939
VERSION BC027939.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2005)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2005)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: d Column: 22
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2005
/db_xref="H-InvDB:HIT000040367"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5201665"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2005
/gene="SNED1"
/gene_synonym="DKFZp586B2420"
/gene_synonym="FLJ00133"
/gene_synonym="Snep"
/gene_synonym="SST3"
/db_xref="GeneID:25992"
/db_xref="HGNC:HGNC:24696"
CDS 134..1936
/gene="SNED1"
/gene_synonym="DKFZp586B2420"
/gene_synonym="FLJ00133"
/gene_synonym="Snep"
/gene_synonym="SST3"
/codon_start=1
/product="SNED1 protein"
/protein_id="AAH27939.1"
/db_xref="GeneID:25992"
/db_xref="HGNC:HGNC:24696"
/translation="MHGILGACGRLRLEPATPLTPLLCAERDECRAHPCRNGGSCRNL
PGAYVCRCPAGFVGVHCETEVDACDSSPCQHGGRCESGGGAYLCVCPESFFGYHCETV
SDPCFSSPCGGRGYCLASNGSHSCTCKVGYTGEDCAKELFPPTALKMERVEESGVSIS
WNPPNGPAARQMLDGYAVTYVSSDGSYRRTDFVDRTRSSHQLQALAAGRAYNISVFSV
KRNSNNKNDISRPAVLLARTRPRPVEGFEVTNVTASTISVQWALHRIRHATVSGVRVS
IRHPEALRDQATDVDRSVDRFTFRALLPGKRYTIQLTTLSGLRGEEHPTESLATAPTH
VWTRPLPPANLTAARVTATSAHVVWDAPTPGSLLEAYVINVTTSQSTKSRYVPNGKLA
SYTVRDLLPGRRYQLSVIAVQSTELGPQHSEPAHLYIITSPRDGADRRWHQGGHHPRV
LKNRPPPARLPELRLLNDHSAPETPTQPPRFSELVDGRGRVSARFGGSPSKAATVRSH
VPGNCSENPCQNGGTCVPGADAHSCDCGPGFKGRRCELACIKVSRPCTRLFSETKSFP
VWEGGVCHHVYKRVYRVHQDICFKESCESTSLKL"
BASE COUNT 464 a 635 c 592 g 314 t
ORIGIN
1 gtggggcttt gccagcaggc agtggaggtg gcatgcctcc cgaggagggg tgggtttggg
61 gctgatggaa gaaaaagcac atgtcctgag tagttgctcc cagctgggaa aggggtaact
121 gaagccccag gaaatgcacg gaatcctggg ggcatgtggg cgcctcagac ttgagccagc
181 aacacccttg acaccccttc tctgtgcaga gagggatgag tgccgagctc acccgtgcag
241 aaatggaggg tcctgcagga acctcccagg ggcctatgtc tgccggtgcc ctgcaggctt
301 cgttggagtc cactgtgaga cagaggtgga cgcctgcgac tccagcccct gccagcatgg
361 aggccggtgt gagagcggcg gtggggccta cctgtgcgtc tgcccagaga gcttcttcgg
421 ctaccactgc gagacagtga gtgacccctg cttctccagc ccctgtgggg gccgtggcta
481 ttgcctggcc agcaacggct cccacagctg cacctgcaaa gtgggctaca cgggcgagga
541 ctgcgccaaa gagctcttcc caccgacggc cctcaagatg gagagagtgg aggagagtgg
601 ggtctctatc tcctggaacc cgcccaatgg tccagccgcc aggcagatgc ttgatggcta
661 cgcggtcacc tacgtctcct ccgacggctc ctaccgccgc acggactttg tggacaggac
721 ccgctcctcg caccagctcc aggccctggc ggccggcagg gcctacaaca tctccgtctt
781 ctcagtgaag cgaaacagta acaacaagaa tgacatcagc aggcctgccg tgctgctggc
841 ccgcacgcga ccccgccctg tggaaggctt cgaggtcacc aatgtgacgg ctagcaccat
901 ctcagtgcag tgggccctgc acaggatccg ccatgccacc gtcagtgggg tccgtgtgtc
961 catccgccac cctgaggccc tcagggacca ggccaccgat gtggacagga gtgtggacag
1021 gttcaccttt agggccctgc tgcctgggaa gaggtacacc atccagctga ccaccctcag
1081 tgggctcagg ggagaggagc accccacaga gagcctggcc accgcgccga cgcacgtgtg
1141 gacccggccc ctgcctccag caaacctgac cgccgcccga gtcactgcca cctctgccca
1201 cgtggtctgg gatgccccga ctccaggcag cttgctggag gcttatgtca tcaatgtgac
1261 caccagccag agcaccaaga gccgctatgt ccccaacggg aagctggcgt cctacacggt
1321 gcgcgacctg ctgccgggac ggcggtacca gctctctgtg atagcagtgc agagcacgga
1381 gctcgggccg cagcacagcg agcccgccca cctctacatc atcacctccc ccagggatgg
1441 cgctgacaga cgctggcacc agggaggaca ccaccctcgg gtgctcaaga acagaccgcc
1501 cccggcgcgc ctgccggagc tgcgcctgct caatgaccac agcgcccccg agacccccac
1561 ccagcccccc aggttctcgg agcttgtgga cggcagagga agagtgagcg ccaggttcgg
1621 tggctcaccc agcaaagcag ccaccgtgag atcacacgtc cctggcaact gttcagaaaa
1681 cccctgtcag aacggaggca cttgtgtgcc gggcgcagac gcccacagct gtgactgcgg
1741 gccagggttc aaaggcagac gctgcgagct cgcctgtata aaggtgtccc gcccctgcac
1801 aaggctgttc tccgagacaa agtcctttcc agtctgggag ggaggcgtct gtcaccacgt
1861 gtataaaaga gtctaccgag ttcaccaaga catctgcttc aaagagagct gtgaaagcac
1921 aagcctcaaa ctataaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aaaaa
//