LOCUS BC027926 2329 bp mRNA linear HUM 04-AUG-2006
DEFINITION Homo sapiens CD1d molecule, mRNA (cDNA clone MGC:34622
IMAGE:5229534), complete cds.
ACCESSION BC027926
VERSION BC027926.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2329)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2329)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: p Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34419629.
FEATURES Location/Qualifiers
source 1..2329
/db_xref="H-InvDB:HIT000040359"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34622 IMAGE:5229534"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2329
/gene="CD1D"
/gene_synonym="CD1A"
/gene_synonym="MGC34622"
/gene_synonym="R3"
/db_xref="GeneID:912"
/db_xref="HGNC:HGNC:1637"
/db_xref="MIM:188410"
CDS 500..1507
/gene="CD1D"
/gene_synonym="CD1A"
/gene_synonym="MGC34622"
/gene_synonym="R3"
/codon_start=1
/product="CD1d molecule"
/protein_id="AAH27926.1"
/db_xref="GeneID:912"
/db_xref="HGNC:HGNC:1637"
/db_xref="MIM:188410"
/translation="MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRT
DGLAWLGELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEF
AKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVN
LAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPG
RLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAG
LSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGV
L"
BASE COUNT 642 a 526 c 640 g 521 t
ORIGIN
1 gttttctacc caagaatgct acttcaggag atcagtcaaa aggttagggt gatggtgacg
61 gtggaaatat agaaaaagga atttattcaa gaggtattca aaaagaagtg aaatagagat
121 gagttggaga tagattggat aaaaagagtg agggagaggg aggtgtcagg ctgcagccca
181 ggttctgagt tgccaaagag gagtcttttc ctccaggaaa ttgagacacg ccggttgtga
241 aacctactga agtgagcggc ggcgccagga ttcctgggac cccgacctct ttgcagctcg
301 cacagctaag ggcgagggcg cccttcggca gaagcagcaa accgccggca agcccagcga
361 ggagggctgc cggggtctgg gcttgggaat tggctggcac ccagcggaaa gggacgtgag
421 ctgagcggcg ggggagaaga gtgcgcaggt cagagggcgg cgcgcagcgg cgctccgcga
481 ggtccccacg ccgggcgata tggggtgcct gctgtttctg ctgctctggg cgctcctcca
541 ggcttgggga agcgctgaag tcccgcaaag gcttttcccc ctccgctgcc tccagatctc
601 gtccttcgcc aatagcagct ggacgcgcac cgacggcttg gcgtggctgg gggagctgca
661 gacgcacagc tggagcaacg actcggacac cgtccgctct ctgaagcctt ggtcccaggg
721 cacgttcagc gaccagcagt gggagacgct gcagcatata tttcgggttt atcgaagcag
781 cttcaccagg gacgtgaagg aattcgccaa aatgctacgc ttatcctatc ccttggagct
841 ccaggtgtcc gctggctgtg aggtgcaccc tgggaacgcc tcaaataact tcttccatgt
901 agcatttcaa ggaaaagata tcctgagttt ccaaggaact tcttgggagc caacccaaga
961 ggccccactt tgggtaaact tggccattca agtgctcaac caggacaagt ggacgaggga
1021 aacagtgcag tggctcctta atggcacctg cccccaattt gtcagtggcc tccttgagtc
1081 agggaagtcg gaactgaaga agcaagtgaa gcccaaggcc tggctgtccc gtggccccag
1141 tcctggccct ggccgtctgc tgctggtgtg ccatgtctca ggattctacc caaagcctgt
1201 atgggtgaag tggatgcggg gtgagcagga gcagcagggc actcagccag gggacatcct
1261 gcccaatgct gacgagacat ggtatctccg agcaaccctg gatgtggtgg ctggggaggc
1321 agctggcctg tcctgtcggg tgaagcacag cagtctagag ggccaggaca tcgtcctcta
1381 ctggggtggg agctacacct ccatgggctt gattgccttg gcagtcctgg cgtgcttgct
1441 gttcctcctc attgtgggct ttacctcccg gtttaagagg caaacttcct atcagggcgt
1501 cctgtgactc gccttgccac atctgtgtct ctggaaccca ggacctctgg acctcaggtt
1561 cccaagactt cagtcctggt ctgctcagga attgaagatg taaggaattg aagataggag
1621 agataccttg aaaaagtaga gaacagtcat gaggcagctt tcatcacacc cttttaacat
1681 ttatctaaaa gaatttaaat tctttttcaa aaattacact acaagtttat aagcccaaat
1741 ggctctgtga aatcagaagt gcaaaggtgt gcaaacttgt atctgaagac ctaccaggga
1801 caagcaggta agagctgatg tgagtgtgtg tgatgggatc tgtaaggaac tggaacacac
1861 atgtcctatc caaaggaatc agctgcagct gcttgttgtc aagtataaag tcaggacctg
1921 gcttggcttt aaccgttttt caagaaaact ggaaatctgg attttcagcg aacatgcctg
1981 attttaaaag gttgactcaa gtttttacaa aatactatgt gggacacctc aaatacatac
2041 ctactgactg atgacaaacc caggagtttg tgtgtctttt ataaaaagtt tgccctggat
2101 gtcatattgg cagttggagg acacagtttc tattgtaaat ttggatttac gactgaagaa
2161 ggacattttc tctttaaaag aaagttaggt tataagaaac agaggcgtct cacattttta
2221 cttggtgtaa ttaataaacg aagataaatc ataaaaaaaa aaaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//