LOCUS BC027907 4262 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens protocadherin 20, mRNA (cDNA clone MGC:34068 IMAGE:5202522), complete cds. ACCESSION BC027907 VERSION BC027907.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4262) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4262) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 49 Row: d Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21536447. FEATURES Location/Qualifiers source 1..4262 /db_xref="H-InvDB:HIT000040346" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34068 IMAGE:5202522" /tissue_type="Lung, Spleen, fetal, pooled" /clone_lib="NIH_MGC_122" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4262 /gene="PCDH20" /gene_synonym="FLJ22218" /gene_synonym="PCDH13" /db_xref="GeneID:64881" /db_xref="HGNC:HGNC:14257" CDS 70..2844 /gene="PCDH20" /gene_synonym="FLJ22218" /gene_synonym="PCDH13" /codon_start=1 /product="protocadherin 20" /protein_id="AAH27907.1" /db_xref="GeneID:64881" /db_xref="HGNC:HGNC:14257" /translation="MGRLHRPRSSTSYRNLPHLFLFFLFVGPFSCLGSYSRATELLYS LNEGLPAGVLIGSLAEDLRLLPRSAGRPDPQSQLPERTGAEWNPPLSFSLASRGLSGQ YVTLDNRSGELHTSAQEIDREALCVEGGGGTAWSGSVSISSSPSDSCLLLLDVLVLPQ EYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPVNTRLAIEHPAVDPDVGINGVQ TYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPPLLGS ATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVDKDLGTNAQITYSYSQ KVPQASKDLFHLDENTGVIKLFSKIGGSVLESHKLTILANGPGCIPAVITALVSIIKV IFRPPEIVPRYIANEIDGVVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRL SPYKPYNNEYLLETTKPMDYELQQFYEVAVVAWNSEGFHVKRVIKVQLLDDNDNAPIF LQPLIELTIEENNSPNAFLTKLYATDADSEERGQVSYFLGPDAPSYFSLDSVTGILTV STQLDREEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPEN FPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYT LWVEAVDGGEPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEV YAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVS DHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVES VSCMPTLVALSVISLGSITLVTGMGIYICLRKGEKHPREDENLEVQIPLKGKIDLHMR ERKPMDISNI" BASE COUNT 1241 a 870 c 939 g 1212 t ORIGIN 1 gggaatgcgc gcagctcaca ggccctggga gtgagctggt gcccggcgac ctggcacccg 61 cgcctggata tggggcgtct acatcgtccc aggagcagca ccagctacag gaacctgccg 121 catctgtttc tgtttttcct cttcgtggga cccttcagct gcctcgggag ttacagccgg 181 gccaccgagc ttctgtacag cctaaacgag ggactacccg cgggggtgct catcggcagc 241 ctggccgagg acctgcggct gctgcccagg tctgcaggga ggccggaccc gcagtcgcag 301 ctgccagagc gcaccggtgc tgagtggaac ccccctctct ccttcagcct ggcctcccgg 361 ggactgagtg gccagtacgt gaccctagac aaccgctctg gggagctgca cacttcagct 421 caggagatcg acagggaggc cctgtgtgtt gaagggggtg gagggactgc gtggagcggc 481 agcgtttcca tctcctcctc tccttctgac tcttgtcttt tgctgctgga tgtgcttgtc 541 ctgcctcagg aatacttcag gtttgtgaag gtgaagatcg ccatcagaga catcaatgac 601 aacgccccgc agttccctgt ttcccagatc tcggtgtggg tcccggaaaa tgcacctgta 661 aacacccgac tggccataga gcatcctgct gtggacccag atgtaggcat taatggggta 721 cagacctatc gcttactgga ctaccatggt atgttcaccc tggacgtgga ggagaatgag 781 aatggggagc gcacccccta cctaattgtc atgggtgctt tggacaggga aacccaggac 841 cagtatgtga gcatcatcat agctgaggat ggtgggtctc caccactttt gggcagtgcc 901 actctcacca ttggcatcag tgacattaat gacaattgcc ctctcttcac agactcacaa 961 atcaatgtca ctgtgtatgg gaatgctaca gtgggcaccc caattgcagc tgtccaggct 1021 gtggataaag acttggggac caatgctcaa attacttatt cttacagtca gaaagttcca 1081 caagcatcta aggatttatt tcacctggat gaaaacactg gagtcattaa acttttcagt 1141 aagattggag gaagtgttct ggagtcccac aagctcacca tccttgctaa tggaccaggc 1201 tgcatccctg ctgtaatcac tgctcttgtg tccattatta aagttatttt cagaccccct 1261 gaaattgtcc ctcgttacat agcaaacgag atagatggtg ttgtttatct gaaagaactg 1321 gaacccgtta acactcccat tgcgtttttc accataagag atccagaagg taaatacaag 1381 gttaactgct acctggatgg tgaagggccg tttaggttat caccttacaa accatacaat 1441 aatgaatatt tactagagac cacaaaacct atggactatg agctacagca gttctatgaa 1501 gtagctgtgg tggcttggaa ctctgaggga tttcatgtca aaagggtcat taaagtgcaa 1561 cttttagatg acaatgataa tgctccaatt ttccttcaac ccttaataga actaaccatc 1621 gaagagaaca actcacccaa tgcctttttg actaagctgt atgctacaga tgccgacagc 1681 gaggagagag gccaagtttc atattttctg ggacctgatg ctccatcata tttttcctta 1741 gacagtgtca caggaattct gacagtttct actcagctgg accgagaaga gaaagaaaag 1801 tacagataca ctgtcagagc tgttgactgt gggaagccac ccagagaatc agtagccact 1861 gtggccctca cagtgttgga taaaaatgac aacagtcctc ggtttatcaa caaggacttc 1921 agcttttttg tgcctgaaaa ctttccaggc tatggtgaga ttggagtaat tagtgtaaca 1981 gatgctgacg ctggacgaaa tggatgggtc gccctctctg tggtgaacca gagtgatatt 2041 tttgtcatag atacaggaaa gggtatgctg agggctaaag tctctttgga cagagagcag 2101 caaagctcct atactttgtg ggttgaagct gttgatgggg gtgagcctgc cctctcctct 2161 acagcaaaaa tcacaattct ccttctagat atcaatgaca accctcctct tgttttgttt 2221 cctcagtcta atatgtctta tctgttagta ctgccttcta ctctgccagg ctccccggtt 2281 acagaagtct atgctgtcga caaagacaca ggcatgaatg ctgtcatagc ttacagcatc 2341 atagggagaa gaggtcctag gcctgagtcc ttcaggattg accctaaaac tggcaacatt 2401 actttggaag aggcattgct gcagacagat tatgggctcc atcgcttact ggtgaaagtg 2461 agtgatcatg gttatcccga gcctctccac tccacagtca tggtgaacct atttgtcaat 2521 gacactgtca gtaatgagag ttacattgag agtcttttaa gaaaagaacc agagattaat 2581 atagaggaga aagaaccaca aatctcaata gaaccgactc ataggaaggt agaatctgtg 2641 tcttgtatgc ccaccttagt agctctgtct gtaataagct tgggttccat cacactggtc 2701 acagggatgg gcatatacat ctgtttaagg aaaggggaaa agcatcccag ggaagatgaa 2761 aatttggaag tacagattcc actgaaagga aaaattgact tgcatatgcg agagagaaag 2821 ccaatggata tttctaatat ttgatatttc atggtggaat aacacagaga aatgttttaa 2881 ctgactttgg atcttcatca cctaaaaaag agtgtgttga tggcagttcc aatgaaggac 2941 aactaattta taacttgttc tatattgtaa atagctgttt acaggttttt aaatttaaat 3001 tcagaggtta taaaatgtgt acagcatttt taagtgaaaa ttagtactaa cagctatagg 3061 acttgtattt aaaaaaaaaa aaaaaagctt ggacatggtt tgcagctttc atacaccaag 3121 cagatgattg ataaaacctg ggagtaaggt aagaaaaatg gaacaaattt ttatctaaaa 3181 attcctgtca ccacaagagg gcatcagctg ctcctttgca ggaaactggg gtattgtact 3241 tggcagttgt acatgaaatt aatgaaagag tatattttaa atatattgtt tttaacatta 3301 aacaaatatg aaattaaagt aaattaaatt tcaccctatt taaacatatg ataaaaaaag 3361 aaatgcactt gcaaacagaa tgtttattac ctcataagtg catatatagt ttgaaagaga 3421 aggcattaaa aagaagtgcg attccttttt agcaaggata aaatcattgc cttgtgttac 3481 agattcagcc tgctgaagag tattccactt tctgtgtact cgaattgctt tctgtttgct 3541 ttaccactgc acttgttatt attacaaggg aaatagatat atacatacat atatatattc 3601 ttcattacag gaaatgtaac tagatattgt gcccaagaaa aacagccaga agcaaagaaa 3661 tgcttcaatc tttagttgct tcataggcat tcatgacatt ttagtgcttt cacaacttgt 3721 tggtcgtact ttatacttgg gttatatatt agacttttat aggcttgaaa tcatccgtca 3781 cataagaaaa tagaaatcat attaaaagtg aattcttcta gaggcttgtg tacactactg 3841 gttgttttag ttgggccttt tatatgaaag ttatactgta cttatctttt tgttgttgtt 3901 taggtttgtt gactaccatt tctggcttcc tttctttggt tttggattaa atccaacagt 3961 ttatttgtaa gccctgcagc agatttcttt gataatttag cttttactga atctcttgca 4021 atgaagaaag ctatttcatc agtgatttat cactttcaat tcattgtgtg agctggaaat 4081 attattttat atgagagcta tagcaaaata atctgtataa acaaggaatg tgttagctta 4141 aactggatca ttttactttt tggcatcatg catctgtact gtaccaaaag tgtttatatg 4201 tctgcaaatt aaaggtatat atttccataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4261 aa //