LOCUS BC027907 4262 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin 20, mRNA (cDNA clone MGC:34068
IMAGE:5202522), complete cds.
ACCESSION BC027907
VERSION BC027907.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4262)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4262)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: d Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536447.
FEATURES Location/Qualifiers
source 1..4262
/db_xref="H-InvDB:HIT000040346"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34068 IMAGE:5202522"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4262
/gene="PCDH20"
/gene_synonym="FLJ22218"
/gene_synonym="PCDH13"
/db_xref="GeneID:64881"
/db_xref="HGNC:HGNC:14257"
CDS 70..2844
/gene="PCDH20"
/gene_synonym="FLJ22218"
/gene_synonym="PCDH13"
/codon_start=1
/product="protocadherin 20"
/protein_id="AAH27907.1"
/db_xref="GeneID:64881"
/db_xref="HGNC:HGNC:14257"
/translation="MGRLHRPRSSTSYRNLPHLFLFFLFVGPFSCLGSYSRATELLYS
LNEGLPAGVLIGSLAEDLRLLPRSAGRPDPQSQLPERTGAEWNPPLSFSLASRGLSGQ
YVTLDNRSGELHTSAQEIDREALCVEGGGGTAWSGSVSISSSPSDSCLLLLDVLVLPQ
EYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPVNTRLAIEHPAVDPDVGINGVQ
TYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPPLLGS
ATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVDKDLGTNAQITYSYSQ
KVPQASKDLFHLDENTGVIKLFSKIGGSVLESHKLTILANGPGCIPAVITALVSIIKV
IFRPPEIVPRYIANEIDGVVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRL
SPYKPYNNEYLLETTKPMDYELQQFYEVAVVAWNSEGFHVKRVIKVQLLDDNDNAPIF
LQPLIELTIEENNSPNAFLTKLYATDADSEERGQVSYFLGPDAPSYFSLDSVTGILTV
STQLDREEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPEN
FPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYT
LWVEAVDGGEPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEV
YAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVS
DHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVES
VSCMPTLVALSVISLGSITLVTGMGIYICLRKGEKHPREDENLEVQIPLKGKIDLHMR
ERKPMDISNI"
BASE COUNT 1241 a 870 c 939 g 1212 t
ORIGIN
1 gggaatgcgc gcagctcaca ggccctggga gtgagctggt gcccggcgac ctggcacccg
61 cgcctggata tggggcgtct acatcgtccc aggagcagca ccagctacag gaacctgccg
121 catctgtttc tgtttttcct cttcgtggga cccttcagct gcctcgggag ttacagccgg
181 gccaccgagc ttctgtacag cctaaacgag ggactacccg cgggggtgct catcggcagc
241 ctggccgagg acctgcggct gctgcccagg tctgcaggga ggccggaccc gcagtcgcag
301 ctgccagagc gcaccggtgc tgagtggaac ccccctctct ccttcagcct ggcctcccgg
361 ggactgagtg gccagtacgt gaccctagac aaccgctctg gggagctgca cacttcagct
421 caggagatcg acagggaggc cctgtgtgtt gaagggggtg gagggactgc gtggagcggc
481 agcgtttcca tctcctcctc tccttctgac tcttgtcttt tgctgctgga tgtgcttgtc
541 ctgcctcagg aatacttcag gtttgtgaag gtgaagatcg ccatcagaga catcaatgac
601 aacgccccgc agttccctgt ttcccagatc tcggtgtggg tcccggaaaa tgcacctgta
661 aacacccgac tggccataga gcatcctgct gtggacccag atgtaggcat taatggggta
721 cagacctatc gcttactgga ctaccatggt atgttcaccc tggacgtgga ggagaatgag
781 aatggggagc gcacccccta cctaattgtc atgggtgctt tggacaggga aacccaggac
841 cagtatgtga gcatcatcat agctgaggat ggtgggtctc caccactttt gggcagtgcc
901 actctcacca ttggcatcag tgacattaat gacaattgcc ctctcttcac agactcacaa
961 atcaatgtca ctgtgtatgg gaatgctaca gtgggcaccc caattgcagc tgtccaggct
1021 gtggataaag acttggggac caatgctcaa attacttatt cttacagtca gaaagttcca
1081 caagcatcta aggatttatt tcacctggat gaaaacactg gagtcattaa acttttcagt
1141 aagattggag gaagtgttct ggagtcccac aagctcacca tccttgctaa tggaccaggc
1201 tgcatccctg ctgtaatcac tgctcttgtg tccattatta aagttatttt cagaccccct
1261 gaaattgtcc ctcgttacat agcaaacgag atagatggtg ttgtttatct gaaagaactg
1321 gaacccgtta acactcccat tgcgtttttc accataagag atccagaagg taaatacaag
1381 gttaactgct acctggatgg tgaagggccg tttaggttat caccttacaa accatacaat
1441 aatgaatatt tactagagac cacaaaacct atggactatg agctacagca gttctatgaa
1501 gtagctgtgg tggcttggaa ctctgaggga tttcatgtca aaagggtcat taaagtgcaa
1561 cttttagatg acaatgataa tgctccaatt ttccttcaac ccttaataga actaaccatc
1621 gaagagaaca actcacccaa tgcctttttg actaagctgt atgctacaga tgccgacagc
1681 gaggagagag gccaagtttc atattttctg ggacctgatg ctccatcata tttttcctta
1741 gacagtgtca caggaattct gacagtttct actcagctgg accgagaaga gaaagaaaag
1801 tacagataca ctgtcagagc tgttgactgt gggaagccac ccagagaatc agtagccact
1861 gtggccctca cagtgttgga taaaaatgac aacagtcctc ggtttatcaa caaggacttc
1921 agcttttttg tgcctgaaaa ctttccaggc tatggtgaga ttggagtaat tagtgtaaca
1981 gatgctgacg ctggacgaaa tggatgggtc gccctctctg tggtgaacca gagtgatatt
2041 tttgtcatag atacaggaaa gggtatgctg agggctaaag tctctttgga cagagagcag
2101 caaagctcct atactttgtg ggttgaagct gttgatgggg gtgagcctgc cctctcctct
2161 acagcaaaaa tcacaattct ccttctagat atcaatgaca accctcctct tgttttgttt
2221 cctcagtcta atatgtctta tctgttagta ctgccttcta ctctgccagg ctccccggtt
2281 acagaagtct atgctgtcga caaagacaca ggcatgaatg ctgtcatagc ttacagcatc
2341 atagggagaa gaggtcctag gcctgagtcc ttcaggattg accctaaaac tggcaacatt
2401 actttggaag aggcattgct gcagacagat tatgggctcc atcgcttact ggtgaaagtg
2461 agtgatcatg gttatcccga gcctctccac tccacagtca tggtgaacct atttgtcaat
2521 gacactgtca gtaatgagag ttacattgag agtcttttaa gaaaagaacc agagattaat
2581 atagaggaga aagaaccaca aatctcaata gaaccgactc ataggaaggt agaatctgtg
2641 tcttgtatgc ccaccttagt agctctgtct gtaataagct tgggttccat cacactggtc
2701 acagggatgg gcatatacat ctgtttaagg aaaggggaaa agcatcccag ggaagatgaa
2761 aatttggaag tacagattcc actgaaagga aaaattgact tgcatatgcg agagagaaag
2821 ccaatggata tttctaatat ttgatatttc atggtggaat aacacagaga aatgttttaa
2881 ctgactttgg atcttcatca cctaaaaaag agtgtgttga tggcagttcc aatgaaggac
2941 aactaattta taacttgttc tatattgtaa atagctgttt acaggttttt aaatttaaat
3001 tcagaggtta taaaatgtgt acagcatttt taagtgaaaa ttagtactaa cagctatagg
3061 acttgtattt aaaaaaaaaa aaaaaagctt ggacatggtt tgcagctttc atacaccaag
3121 cagatgattg ataaaacctg ggagtaaggt aagaaaaatg gaacaaattt ttatctaaaa
3181 attcctgtca ccacaagagg gcatcagctg ctcctttgca ggaaactggg gtattgtact
3241 tggcagttgt acatgaaatt aatgaaagag tatattttaa atatattgtt tttaacatta
3301 aacaaatatg aaattaaagt aaattaaatt tcaccctatt taaacatatg ataaaaaaag
3361 aaatgcactt gcaaacagaa tgtttattac ctcataagtg catatatagt ttgaaagaga
3421 aggcattaaa aagaagtgcg attccttttt agcaaggata aaatcattgc cttgtgttac
3481 agattcagcc tgctgaagag tattccactt tctgtgtact cgaattgctt tctgtttgct
3541 ttaccactgc acttgttatt attacaaggg aaatagatat atacatacat atatatattc
3601 ttcattacag gaaatgtaac tagatattgt gcccaagaaa aacagccaga agcaaagaaa
3661 tgcttcaatc tttagttgct tcataggcat tcatgacatt ttagtgcttt cacaacttgt
3721 tggtcgtact ttatacttgg gttatatatt agacttttat aggcttgaaa tcatccgtca
3781 cataagaaaa tagaaatcat attaaaagtg aattcttcta gaggcttgtg tacactactg
3841 gttgttttag ttgggccttt tatatgaaag ttatactgta cttatctttt tgttgttgtt
3901 taggtttgtt gactaccatt tctggcttcc tttctttggt tttggattaa atccaacagt
3961 ttatttgtaa gccctgcagc agatttcttt gataatttag cttttactga atctcttgca
4021 atgaagaaag ctatttcatc agtgatttat cactttcaat tcattgtgtg agctggaaat
4081 attattttat atgagagcta tagcaaaata atctgtataa acaaggaatg tgttagctta
4141 aactggatca ttttactttt tggcatcatg catctgtact gtaccaaaag tgtttatatg
4201 tctgcaaatt aaaggtatat atttccataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4261 aa
//