LOCUS BC027878 2110 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 1 open reading frame 87, mRNA (cDNA clone
MGC:34837 IMAGE:5207590), complete cds.
ACCESSION BC027878
VERSION BC027878.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2110)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2110)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22748810.
FEATURES Location/Qualifiers
source 1..2110
/db_xref="H-InvDB:HIT000040331"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34837 IMAGE:5207590"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2110
/gene="C1orf87"
/gene_synonym="MGC34837"
/db_xref="GeneID:127795"
/db_xref="HGNC:HGNC:28547"
CDS 93..1733
/gene="C1orf87"
/gene_synonym="MGC34837"
/codon_start=1
/product="chromosome 1 open reading frame 87"
/protein_id="AAH27878.1"
/db_xref="GeneID:127795"
/db_xref="HGNC:HGNC:28547"
/translation="MSSAWKTPRGSDAMPEIMVKIIGSKHFQYLVEKPKIKENDSLKT
ETQTMHQKPMTDNARQMSRDTPVPINFTDQQTTDNPDDVKEKKHPENNQKSENNQKLL
TGANSSRFLDGNIPSQANVHCSSVPTGDQSLSYVHGIPRRKLRDWSLEQMVRGSSDQP
EDIGQSPSGTTNEDAFLLALVRRELKSRPLSSNLLEKLQKELKILDPISSGFLLQSQL
SRLFLKHEVPLQLPTVKILCQRFSKRGSPEMVNYEKLLWFLNSAASDYPQQNKAAADL
RKTESHGTHSQSTPPQHSSSQPEVNRSLLEILKMALRTTNGRLNIDNLNLSFRKEDRS
FSGCLPLPKVRAICGKHGLYLTLSLLETLLNHQDLGYQNEIKWQNFVEMLTRASSDLL
SDLPTGKNEKKAPAPPMEPEVPEMSQSKTEHMKTPEEELQPESSPAETSACKDPLKPL
KIRPVSQPFVNPAVKNKAEECETWIDRFRKLENALYLCDLSNTGVLEKERARRLIHNY
NLIYNLSLSPQKIDQALRRFRSGENMLLEPALRYLKEL"
BASE COUNT 717 a 470 c 452 g 471 t
ORIGIN
1 gcttcctggg gagaagcacg gaccgcgcac ctctgagctg ccagggtggg gacgctgccc
61 tagcgggatc tgaagggatt ttgaaaggaa tcatgtcttc agcctggaag actccccgtg
121 gatcagatgc aatgcctgag atcatggtga aaatcattgg aagtaaacac tttcaatacc
181 tcgtggagaa gccaaagatc aaggagaatg acagcttgaa aacagaaacc caaacaatgc
241 accagaaacc aatgactgat aatgcaaggc agatgagcag agacacccca gttcccatta
301 acttcactga tcagcaaacc actgataatc cagatgatgt gaaagagaaa aagcacccag
361 agaacaacca gaaatcagaa aacaaccaga aactactaac aggggcaaac agtagcagat
421 tcctggatgg caatattccc agtcaagcaa atgtccactg cagctctgta ccaaccggag
481 accagtcctt atcctatgtg catggcattc ccaggagaaa gcttagagac tggtccttgg
541 aacagatggt gagaggcagc tctgaccaac ctgaggatat tggccagagc ccaagtggga
601 caacaaatga agacgctttt cttcttgccc tggtcagaag agaactcaag tcacgtcctt
661 tgagttccaa cttattagaa aagcttcaga aagagctgaa gatcctggac ccaatctctt
721 caggatttct tctccaatct cagctgagcc gcctcttttt gaagcatgaa gtccctctac
781 agttaccaac agttaaaatc ctttgtcaga gattttctaa gaggggttct cctgaaatgg
841 tgaattatga aaagctactc tggtttttaa acagtgcagc atcagattat ccacagcaaa
901 ataaagcagc tgcagacctg agaaaaactg agagtcatgg cactcatagc caaagcactc
961 cacctcagca ctccagctca cagccagaag tgaacaggag tctgttggag attttgaaga
1021 tggcactaag gacaaccaat ggcagactca acatagacaa tctcaatctg agttttcgaa
1081 aagaagatcg ctcgttctct ggctgcctcc ctctacctaa ggtcagggct atatgtggga
1141 agcatggatt atatctgacc ctgagcctgc tggaaacatt gcttaaccat caagatttgg
1201 gttaccaaaa tgaaataaaa tggcagaatt ttgttgagat gctgaccaga gcttcttctg
1261 atttgttatc tgatttgcct acagggaaga atgaaaagaa agcccctgcc cctccaatgg
1321 agcctgaagt ccccgagatg tctcaaagca aaactgaaca tatgaaaact ccagaagagg
1381 agctgcagcc agaaagctct cctgctgaaa cttcagcctg caaagatcct ctgaaacctt
1441 taaagatcag gccagtctcc cagcccttcg tgaatccagc tgtgaagaac aaggctgagg
1501 aatgtgagac gtggatagac aggttcagga agctggaaaa tgccctctac ctgtgtgatc
1561 tgagtaacac aggagttctg gagaaggaac gagccagacg cctcattcac aactacaatc
1621 tcatttacaa cctgtccctg agccctcaga aaatcgacca ggccttgcgc agattccgtt
1681 cgggagaaaa tatgctcttg gagccagcac tgcggtactt aaaggagcta tgataacaag
1741 cccatattgt gagaacagat gtttccctta tctccctttt tacccagaca catgtttctc
1801 cccagcctaa gtgtagtggc ggaggcattg tcagagtgga ggccgatgca gctattgtag
1861 atgcttttga tttggactta gtttctggct atgatgctca ctcataagca gttcaaagtg
1921 atcagaggaa acctagtttt atcttttgat gtggcaagaa cccagctact tagaatctcc
1981 ttctgtttta ataaaactta ttattaatat taaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa
//