LOCUS BC027624 2412 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens Bardet-Biedl syndrome 4, mRNA (cDNA clone MGC:33591
IMAGE:4824276), complete cds.
ACCESSION BC027624
VERSION BC027624.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2412)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2412)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC027624.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: l Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25952121.
FEATURES Location/Qualifiers
source 1..2412
/db_xref="H-InvDB:HIT000040297"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33591 IMAGE:4824276"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2412
/gene="BBS4"
/db_xref="GeneID:585"
/db_xref="HGNC:HGNC:969"
/db_xref="MIM:600374"
CDS 20..1579
/gene="BBS4"
/codon_start=1
/product="Bardet-Biedl syndrome 4"
/protein_id="AAH27624.1"
/db_xref="GeneID:585"
/db_xref="HGNC:HGNC:969"
/db_xref="MIM:600374"
/translation="MAEERVATRTQFPVSTESQKPRQKKAPEFPILEKQNWLIHLHYI
RKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSAD
NLKQVARSLFLLGKHKAAIEVYNEAAKLNQKDWEISHNLGVCYIYLKQFNKAQDQLHN
ALNLNRHDLTYIMLGKIHLLEGDLDKAIEVYKKAVEFSPENTELLTTLGLLYLQLGIY
QKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFDVALTKYRVVACAVPESPPLWNNI
GMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQ
PKMGELYMLLAVALTNLEDTENAKRAYAEAVHLDKCNPLVNLNYAVLLYNQGEKKNAL
VQYQEMEKKVSLLKDNSSLEFDSEMVEMAQKLGAALQVGEALVWTKPVKDPKSKHQTT
STSKPASFQQPLGSNQALGQAMSSAAAYRTLPSGAGGTSQFTKPPSLPLEPEPAVESS
PTETSEQIREK"
BASE COUNT 738 a 532 c 561 g 581 t
ORIGIN
1 ggcggtgggc tgagctaaaa tggctgagga gagagtcgcg acgagaactc aatttcctgt
61 atctactgag tctcaaaaac cccggcagaa aaaagctcca gagtttccta ttttggagaa
121 gcagaactgg ttgattcatc ttcattatat ccggaaagat tatgaagcct gcaaggctgt
181 tatcaaagaa cagcttcaag agactcaggg attgtgtgaa tatgctatct atgtccaagc
241 attgatattt cgcctagaag gaaatatcca agaatcccta gaactcttcc agacatgtgc
301 agttcttagt cctcagagtg ctgataacct caagcaggtg gccagatctt tatttctttt
361 gggaaaacat aaagctgcca ttgaagtata taatgaagca gctaaactca accagaaaga
421 ttgggagatc agccataacc taggagtttg ctacatatac ctgaagcagt tcaacaaggc
481 acaagaccag ttgcacaatg ccctgaatct taataggcac gatctgactt atataatgct
541 ggggaagatc cacttgctgg agggagactt ggacaaggcc attgaagtct acaagaaagc
601 agtggagttc tcaccagaaa atacagagct tcttacaact ttaggattac tctacttaca
661 gctcggcatt taccagaagg catttgaaca tcttggcaat gcactgactt atgaccctac
721 caactacaag gccatcttgg cagcaggcag catgatgcag acccacgggg actttgatgt
781 tgccctcacc aaatacagag ttgtggcttg tgctgttcca gaaagtcctc cactctggaa
841 taacattgga atgtgtttct ttggcaagaa gaaatatgtg gcggccatca gctgcctgaa
901 acgagccaac tacttggcac ccttcgattg gaagattctg tataatttgg gccttgtcca
961 tttgaccatg cagcagtatg catcagcttt tcattttctc agtgcggcca tcaacttcca
1021 gccaaagatg ggggagctct acatgctctt ggcagtggct ctgaccaatc tggaagatac
1081 agaaaatgcc aagagagcct acgcagaagc agtccacctg gataagtgta accctttagt
1141 aaacctgaac tatgctgtgc tgctgtacaa ccagggcgag aagaagaacg ccctggtcca
1201 atatcaggag atggagaaga aagtcagcct actcaaggac aatagctctc tggaatttga
1261 ctctgagatg gtggagatgg ctcagaagtt gggagctgct ctccaggttg gggaggcact
1321 ggtctggacc aaaccagtta aagatcccaa atcaaagcac cagaccactt caaccagcaa
1381 acctgccagt ttccagcagc ctctgggctc taatcaagct ctaggacagg caatgtcttc
1441 agcagctgca tacaggacgc tcccctcagg tgctggagga acatcccagt tcacaaagcc
1501 cccatctctt cctctggagc cagagcctgc ggtggaatca agtccaactg aaacatcaga
1561 acaaataaga gagaaataag aatagaatga atgaccccaa aatagggttt tcttgggcga
1621 ggatgtgctg gattaggaaa ggtgacatga cacaggcaga gcagagtggc acccaccaca
1681 gaatacagtg tgtgttatta cgaggagcca gcagttgagc ctaaggtcct tctacctacc
1741 tggtattggc atttgaggtc ggaaaccctc tactgcccca taagccagga aaagtgaaaa
1801 gagaacacag ttcctttaag aactggcagc aaggcttgag gccttatgta tgtagctgag
1861 tcagcaaggt acatgatgct gtctgctttc aaaaggactt ttctctccta gctgactgac
1921 tccttcctta gttcaaggaa cagctgagac agacctctgc tgagtagctc tgtgatgaca
1981 aagccttggt ttaactgagg tgatcctcag gttgtgaggt ttattagtcc ccaaggcaaa
2041 cacaaatatt agattaataa tccaacttta atagtataca tttaaaagaa aaaaaacaaa
2101 agccctggaa gttgaggcca agcctgctga gtattgcagc tgcatttgcc caaagggaat
2161 ccagaacaag tccctccctg tattttgttc ttgagagggg tcagtctaga agctagatcc
2221 tatcaggatg aggagcagca gcccagggct tgtctggatc agcaccaacg attttaaaga
2281 aaaaaggaag agtttcttag atgagtaatt gttattgaag atagtcagtg ataaccactg
2341 accagatgct atcaatacac tatgtgtcct ttttagaata aagattacat atcatcgaaa
2401 aaaaaaaaaa aa
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