LOCUS BC027178 1424 bp mRNA linear HUM 18-JAN-2007
DEFINITION Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S.
cerevisiae), mRNA (cDNA clone IMAGE:4343048), partial cds.
ACCESSION BC027178
VERSION BC027178.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1424)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1424)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: l Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1424
/db_xref="H-InvDB:HIT000040246"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4343048"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1424
/gene="PRPF40A"
/gene_synonym="FBP-11"
/gene_synonym="FBP11"
/gene_synonym="FLAF1"
/gene_synonym="HIP10"
/gene_synonym="HYPA"
/gene_synonym="NY-REN-6"
/db_xref="GeneID:55660"
/db_xref="HGNC:HGNC:16463"
CDS <1..649
/gene="PRPF40A"
/gene_synonym="FBP-11"
/gene_synonym="FBP11"
/gene_synonym="FLAF1"
/gene_synonym="HIP10"
/gene_synonym="HYPA"
/gene_synonym="NY-REN-6"
/codon_start=2
/product="PRPF40A protein"
/protein_id="AAH27178.1"
/db_xref="GeneID:55660"
/db_xref="HGNC:HGNC:16463"
/translation="MKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLE
SERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKK
RQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRE
SEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ"
BASE COUNT 539 a 209 c 277 g 399 t
ORIGIN
1 gatgaaacga aaagaatctg catttaagag tatgttaaaa caagctgctc ctccgataga
61 attggatgct gtctgggaag atatccgtga gagatttgta aaagagccag catttgagga
121 cataactcta gaatctgaaa gaaaacgaat atttaaagat tttatgcatg tgcttgagca
181 tgaatgtcag catcatcatt caaagaacaa gaaacattct aagaaatcta aaaaacatca
241 taggaaacgt tcccgctctc gatcggggtc agattcagat gatgatgata gccattcaaa
301 gaaaaaaaga cagcgatcag agtctcgttc tgcttcagaa cattcttcta gtgcagagtc
361 tgagagaagt tataaaaagt caaaaaagca taagaagaaa agtaagaaga ggagacataa
421 atctgactct ccagaatccg atgctgagcg agagaaggat aaaaaagaaa aagatcggga
481 aagtgaaaaa gacagaacta gacaaagatc agaatcaaaa cacaaatcgc ctaagaaaaa
541 gactggaaag gattctggta attgggatac ttctggcagc gaactgagtg aaggggaatt
601 ggaaaagcgc agaagaaccc ttttggagca actggatgat gatcaataaa ttataccaaa
661 tatatgttta cagtatgatt taaagtctga ttcagaccag ggactctatt ttaagttcaa
721 ctgaaataac actgggtttt aattatatca caggaaaaaa aaagtgcatt taagtattgt
781 tatcgtggac tttataaaag caaaggaaat tgaaagtaac ttttgattct gtatcaagaa
841 tcatattttc atacagtcat aactgtcttt ctgtgaccct ttcacagggc actgtaggat
901 ggattaaagg tggcaattta ctgataactg cagatgtctc tactttgttc taaaatctaa
961 gtcataaggt gatttgattt actttataga agctggattt tgaagatcta atgaaaaatt
1021 ttttgataat atagtagtac aaaaaaagca ccagcaactg ataaaaattg cttttttgtg
1081 cgctacccaa ctggttaaag ccaatgtgat cttttatggt gaaactccta agaaacaggt
1141 ggttttgctg gaaacttggt agacccttaa ttatagtggt gctaatgagc actactgtaa
1201 tataaagcca ccattatttt ttatcaaaca tctgaataca ttttacaaag gctattgtga
1261 gggcattatt ttgagcatct attttgaggt gatgtttaaa aaaactttaa catcaaatca
1321 aattgtaaat taatttaaat atattgcctt aaggacctac taaagaatgt gccaccagac
1381 tttaagtgat agttgcaata tccttgtcta aaaaaaaaaa aaaa
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