LOCUS BC027175 1291 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens major histocompatibility complex, class II, DM beta,
mRNA (cDNA clone MGC:17194 IMAGE:4341639), complete cds.
ACCESSION BC027175
VERSION BC027175.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1291)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1291)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: j Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18641376.
FEATURES Location/Qualifiers
source 1..1291
/db_xref="H-InvDB:HIT000040244_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17194 IMAGE:4341639"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1291
/gene="HLA-DMB"
/gene_synonym="D6S221E"
/gene_synonym="RING7"
/db_xref="GeneID:3109"
/db_xref="HGNC:HGNC:4935"
/db_xref="MIM:142856"
CDS 145..936
/gene="HLA-DMB"
/gene_synonym="D6S221E"
/gene_synonym="RING7"
/codon_start=1
/product="major histocompatibility complex, class II, DM
beta"
/protein_id="AAH27175.1"
/db_xref="GeneID:3109"
/db_xref="HGNC:HGNC:4935"
/db_xref="MIM:142856"
/translation="MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCI
SFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQ
PFWGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHS
SAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLK
VSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS"
BASE COUNT 322 a 347 c 320 g 302 t
ORIGIN
1 caagggaccc gggcaatata gtattctgct cagtgtctgg agatcatcta cccaggctgg
61 ggcttctggg acaggcgagg acccacggac cctggaagag ctggtccagg ggactgaact
121 cccggcatct ttacagagca gagcatgatc acattcctgc cgctgctgct ggggctcagc
181 ctgggctgca caggagcagg tggcttcgtg gcccatgtgg aaagcacctg tctgttggat
241 gatgctggga ctccaaagga tttcacatac tgcatctcct tcaacaagga tctgctgacc
301 tgctgggatc cagaggagaa taagatggcc ccttgcgaat ttggggtgct gaatagcttg
361 gcgaatgtcc tctcacagca cctcaaccaa aaagacaccc tgatgcagcg cttgcgcaat
421 gggcttcaga attgtgccac acacacccag cccttctggg gatcactgac caacaggaca
481 cggccaccat ctgtgcaagt agccaaaacc actcctttta acacgaggga gcctgtgatg
541 ctggcctgct atgtgtgggg cttctatcca gcagaagtga ctatcacgtg gaggaagaac
601 gggaagcttg tcatgcctca cagcagtgcg cacaagactg cccagcccaa tggagactgg
661 acataccaga ccctctccca tttagcctta accccctctt acggggacac ttacacctgt
721 gtggtagagc acattggggc tcctgagccc atccttcggg actggacacc tgggctgtcc
781 cccatgcaga ccctgaaggt ttctgtgtct gcagtgactc tgggcctggg cctcatcatc
841 ttctctcttg gtgtgatcag ctggcggaga gctggccact ctagttacac tcctcttcct
901 gggtccaatt attcagaagg atggcacatt tcctagaggc agaatcctac aacttccact
961 ccaagtgaga aggagattca aactcaatga tgctaccatg cctctccaac atcttcaacc
1021 ccctgacatt atcttggatc ctatggtttc tccatccaat tctttgaatt tcccagtctc
1081 ccctatgtaa aacttagcaa cttgggggac ctcattcctg ggactatgct gtaaccaaat
1141 tattgtccaa ggctatattt ctgggatgaa tataatctga ggaagggagt taaagaccct
1201 cctggggctc tcagtgtgcc atagaggaca gcaactggtg attgtttcag agaaataaac
1261 tttggtggaa aaaaaaaaaa aaaaaaaaaa a
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