LOCUS BC026956 2458 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens peroxisome proliferator-activated receptor gamma,
coactivator 1 beta, mRNA (cDNA clone IMAGE:5104499), partial cds.
ACCESSION BC026956
VERSION BC026956.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2458)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2458)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: f Column: 10.
FEATURES Location/Qualifiers
source 1..2458
/db_xref="H-InvDB:HIT000091308"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5104499"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2458
/gene="PPARGC1B"
/gene_synonym="PERC"
/gene_synonym="PGC-1(beta)"
/gene_synonym="PGC1B"
/db_xref="GeneID:133522"
/db_xref="HGNC:HGNC:30022"
/db_xref="MIM:608886"
CDS <1..2227
/gene="PPARGC1B"
/gene_synonym="PERC"
/gene_synonym="PGC-1(beta)"
/gene_synonym="PGC1B"
/codon_start=2
/product="PPARGC1B protein"
/protein_id="AAH26956.1"
/db_xref="GeneID:133522"
/db_xref="HGNC:HGNC:30022"
/db_xref="MIM:608886"
/translation="ACSNPSQQVRSRPWSRHHSKASWAEFSILRELLAQDVLCDVSKP
YRLATPVYASLTPRSRPRPPKDSQASPGRPSSVEEVRIAASPKSTGPRPSLRPLRLEV
KREVRRPARLQQQEEEDEEEEEEEEEEEKEEEEEWGRKRPGRGLPWTKLGRKLESSVC
PVRRSRRLNPELGPWLTFADEPLVPSEPQGALPSLCLAPKAYDVERELGSPTDEDSGQ
DQQLLRGPQIPALESSCESGCGDMDEDPSCPQLPPRDSPRCLMLALSQSDPTFGKKSF
EQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDIKHSLGKEIALSLPSPEGLSLKATP
GAAHKLPKKHPERSELLSHLRHATAQPASQAGQKRPFSCSFGDHDYCQVLRPEGVLQR
KVLRSWEPSGVHLEDWPQQGAPWAEAQAPGREEDRSCDAGAPPKDSTLLRDHEIRASL
TKHFGLLETALEEEDLASCKSPEYDTVFEDSSSSSGESSFLPEEEEEEGEEEEEDDEE
EDSGVSPTCSDHCPYQSPPSKANRQLCSRSRSSSGSSPCHSWSPATRRNFRCESRGPC
SDRTPSIRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNR
RGEKYGFITYRCSEHAALSLTKGAALRKRNEPSFQLSYGGLRHLGWPRYTDYGWQAVP
TGQRSTQRPKALGSSHSKVPTHSGRPGNHPVFVSCSLPSPLPCLYTPVPRFQFRRGGS
C"
BASE COUNT 579 a 760 c 727 g 392 t
ORIGIN
1 ggcctgcagc aacccctccc agcaggtcag atcccggccc tggtcccggc accactccaa
61 agcctcctgg gctgagttct ccattctgag ggaacttctg gctcaagacg tgctctgtga
121 tgtcagcaaa ccctaccgtc tggccacgcc tgtttatgcc tccctcacac ctcggtcaag
181 gcccaggccc cccaaagaca gtcaggcctc ccctggtcgc ccgtcctcgg tggaggaggt
241 aaggatcgca gcttcaccca agagcaccgg gcccagacca agcctgcgcc cactgcggct
301 ggaggtgaaa agggaggtcc gccggcctgc cagactgcag cagcaggagg aggaagacga
361 ggaagaagag gaggaggaag aggaagaaga aaaagaggag gaggaggagt ggggcaggaa
421 aaggccaggc cgaggcctgc catggacgaa gctggggagg aagctggaga gctctgtgtg
481 ccccgtgcgg cgttctcgga gactgaaccc tgagctgggc ccctggctga catttgcaga
541 tgagccgctg gtcccctcgg agccccaagg tgctctgccc tcactgtgcc tggctcccaa
601 ggcctacgac gtagagcggg agctgggcag ccccacggac gaggacagtg gccaagacca
661 gcagctccta cggggacccc agatccctgc cctggagagc tcctgtgaga gtgggtgtgg
721 ggacatggat gaggacccca gctgcccgca gctccctccc agagactctc ccaggtgcct
781 catgctggcc ttgtcacaaa gcgacccaac ttttggcaag aagagctttg agcagacctt
841 gacagtggag ctctgtggca cagcaggact caccccaccc accacaccac cgtacaagcc
901 cacagaggag gatcccttca aaccagacat caagcatagt ctaggcaaag aaatagctct
961 cagcctcccc tcccctgagg gcctctcact caaggccacc ccaggggctg cccacaagct
1021 gccaaagaag cacccagagc gaagtgagct cctgtcccac ctgcgacatg ccacagccca
1081 gccagcctcc caggctggcc agaagcgtcc cttctcctgt tcctttggag accatgacta
1141 ctgccaggtg ctccgaccag aaggcgtcct gcaaaggaag gtgctgaggt cctgggagcc
1201 gtctggggtt caccttgagg actggcccca gcagggtgcc ccttgggctg aggcacaggc
1261 ccctggcagg gaggaagaca gaagctgtga tgctggcgcc ccacccaagg acagcacgct
1321 gctgagagac catgagatcc gtgccagcct caccaaacac tttgggctgc tggagaccgc
1381 cctggaggag gaagacctgg cctcctgcaa gagccctgag tatgacactg tctttgaaga
1441 cagcagcagc agcagcggcg agagcagctt cctcccagag gaggaagagg aagaagggga
1501 ggaggaggag gaggacgatg aagaagagga ctcaggggtc agccccactt gctctgacca
1561 ctgcccctac cagagcccac caagcaaggc caaccggcag ctctgttccc gcagccgctc
1621 aagctctggc tcttcaccct gccactcctg gtcaccagcc actcgaagga acttcagatg
1681 tgagagcaga gggccgtgtt cagacagaac gccaagcatc cggcacgcca ggaagcggcg
1741 ggaaaaggcc attggggaag gccgcgtggt gtacattcaa aatctctcca gcgacatgag
1801 ctcccgagag ctgaagaggc gctttgaagt gtttggtgag attgaggagt gcgaggtgct
1861 gacaagaaat aggagaggcg agaagtacgg cttcatcacc taccggtgtt ctgagcacgc
1921 ggccctctct ttgacaaagg gcgctgccct gaggaagcgc aacgagccct ccttccagct
1981 gagctacgga gggctccggc acttaggatg gcccagatac actgactacg gatggcaggc
2041 agtgcccaca gggcagcgct caactcagcg ccccaaggcc ttggggagca gccactcaaa
2101 ggtgcccact catagtggca gaccaggcaa ccatccggtc tttgtaagtt gctcactgcc
2161 ttcccctctt ccctgcctct acacccctgt gcccagattc caattcagaa gaggcggttc
2221 ctgctaggcc cgggcccaag tatgaagcca tgcgcagaaa cagcttactg aaagaggccc
2281 agcagagcct gcattgatca cagccttaac cctcgaggtc ttcctcaata ccttgctcaa
2341 ggcccttcga gaatgtttac gttttcaaag atcgcaagta tatgaggaga gcgagcgagc
2401 gtgagaccca acccgtgagg gagactcgaa actgctgtcc tttaaaaaaa aaaaaaaa
//