LOCUS BC026329 3000 bp mRNA linear HUM 25-JAN-2007
DEFINITION Homo sapiens gap junction protein, alpha 1, 43kDa, mRNA (cDNA clone
MGC:26323 IMAGE:4794131), complete cds.
ACCESSION BC026329
VERSION BC026329.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3000)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3000)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: d Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4755136.
FEATURES Location/Qualifiers
source 1..3000
/db_xref="H-InvDB:HIT000040199"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26323 IMAGE:4794131"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3000
/gene="GJA1"
/gene_synonym="CX43"
/gene_synonym="DFNB38"
/db_xref="GeneID:2697"
/db_xref="HGNC:HGNC:4274"
/db_xref="MIM:121014"
CDS 89..1237
/gene="GJA1"
/gene_synonym="CX43"
/gene_synonym="DFNB38"
/codon_start=1
/product="gap junction protein, alpha 1, 43kDa"
/protein_id="AAH26329.1"
/db_xref="GeneID:2697"
/db_xref="HGNC:HGNC:4274"
/db_xref="MIM:121014"
/translation="MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESA
WGDEQSAFRCNTQQPGCENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRK
EEKLNKKEEELKVAQTDGVNVDMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISIL
FKSIFEVAFLLIQWYIYGFSLSAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSL
VSLALNIIELFYVFFKGVKDRVKGKSDPYHATSGALSPAKDCGSQKYAYFNGCSSPTA
PLSPMSPPGYKLVTGDRNNSSCRNYNKQASEQNWANYSAEQNRMGQAGSTISNSHAQP
FDFPDDNQNSKKLAAGHELQPLAIVDQRPSSRASSRASSRPRPDDLEI"
BASE COUNT 870 a 572 c 627 g 931 t
ORIGIN
1 gccttttcat tttacttcat cctccaagga gttcaatcac ttggcgtgac ttcactactt
61 ttaagcaaaa gagtggtgcc caggcaacat gggtgactgg agcgccttag gcaaactcct
121 tgacaaggtt caagcctact caactgctgg agggaaggtg tggctgtcag tacttttcat
181 tttccgaatc ctgctgctgg ggacagcggt tgagtcagcc tggggagatg agcagtctgc
241 ctttcgttgt aacactcagc aacctggttg tgaaaatgtc tgctatgaca agtctttccc
301 aatctctcat gtgcgcttct gggtcctgca gatcatattt gtgtctgtac ccacactctt
361 gtacctggct catgtgttct atgtgatgcg aaaggaagag aaactgaaca agaaagagga
421 agaactcaag gttgcccaaa ctgatggtgt caatgtggac atgcacttga agcagattga
481 gataaagaag ttcaagtacg gtattgaaga gcatggtaag gtgaaaatgc gaggggggtt
541 gctgcgaacc tacatcatca gtatcctctt caagtctatc tttgaggtgg ccttcttgct
601 gatccagtgg tacatctatg gattcagctt gagtgctgtt tacacttgca aaagagatcc
661 ctgcccacat caggtggact gtttcctctc tcgccccacg gagaaaacca tcttcatcat
721 cttcatgctg gtggtgtcct tggtgtccct ggccttgaat atcattgaac tcttctatgt
781 tttcttcaag ggcgttaagg atcgggttaa gggaaagagc gacccttacc atgcgaccag
841 tggtgcgctg agccctgcca aagactgtgg gtctcaaaaa tatgcttatt tcaatggctg
901 ctcctcacca accgctcccc tctcgcctat gtctcctcct gggtacaagc tggttactgg
961 cgacagaaac aattcttctt gccgcaatta caacaagcaa gcaagtgagc aaaactgggc
1021 taattacagt gcagaacaaa atcgaatggg gcaggcggga agcaccatct ctaactccca
1081 tgcacagcct tttgatttcc ccgatgataa ccagaattca aaaaaactag ctgctggaca
1141 tgaattacag ccactagcca ttgtggacca gcgaccttca agcagagcca gcagtcgtgc
1201 cagcagcaga cctcggcctg atgacctgga gatctagata caggcttgaa agcatcaaga
1261 ttccactcaa ttgtggagaa gaaaaaaggt gctgtagaaa gtgcaccagg tgttaatttt
1321 gatccggtgg aggtggtact caacagcctt attcatgagg cttagaaaac acaaagacat
1381 tagaatacct aggttcactg ggggtgtatg gggtagatgg gtggagaggg aggggataag
1441 agaggtgcat gttggtattt aaagtagtgg attcaaagaa cttagattat aaataagagt
1501 tccattaggt gatacataga taagggcttt ttctccccgc aaacacccct aagaatggtt
1561 ctgtgtatgt gaatgagcgg gtggtaattg tggctaaata tttttgtttt accaagaaac
1621 tgaaataatt ctggccagga ataaatactt cctgaacatc ttaggtcttt tcaacaagaa
1681 aaagacagag gattgtcctt aagtccctgc taaaacattc cattgttaaa atttgcactt
1741 tgaaggtaag ctttctaggc ctgaccctcc aggtgtcaat ggacttgtgc tactatattt
1801 ttttattctt ggtatcagtt taaaattcag acaaggccca cagaataaga ttttccatgc
1861 atttgcaaat acgtatattc tttttccatc cacttgcaca atatcattac catcactttt
1921 tcatcattcc tcagctacta ctcacattca tttaatggtt tctgtaaaca tttttaagac
1981 agttgggatg tcacttaaca tttttttttt gagctaaagt cagggaatca agccatgctt
2041 aatatttaac aatcacttat atgtgtgtcg aagagtttgt tttgtttgtc atgtattggt
2101 acaagcagat acagtataaa ctcacaaaca cagatttgaa aataatgcac atatggtgtt
2161 caaatttgaa cctttctcat ggatttttgt ggtgtgggcc aatatggtgt ttacattata
2221 taattcctgc tgtggcaagt aaagcacact ttttttttct cctaaaatgt ttttccctgt
2281 gtatcctatt atggatactg gttttgttaa ttatgattct ttattttctc tccttttttt
2341 aggatatagc agtaatgcta ttactgaaat gaatttcctt tttctgaaat gtaatcattg
2401 atgcttgaat gatagaattt tagtactgta aacaggcttt agtcattaat gtgagagact
2461 tagaaaaaat gcttagagtg gactattaaa tgtgcctaaa tgaattttgc agtaactggt
2521 attcttgggt tttcctactt aatacacagt aattcagaac ttgtattcta ttatgagttt
2581 agcagtcttt tggagtgacc agcaactttg atgtttgcac taagatttta tttggaatgc
2641 aagagaggtt gaaagaggat tcagtagtac acatacaact aatttatttg aactatatgt
2701 tgaagacatc taccagtttc tccaaatgcc ttttttaaaa ctcatcacag aagattggtg
2761 aaaatgctga gtatgacact tttcttcttg catgcatgtc agctacataa acagttttgt
2821 acaatgaaaa ttactaattt gtttgacatt ccatgttaaa ctacggtcat gttcagcttc
2881 attgcatgta atgtagacct agtccatcag atcatgtgtt ctggagagtg ttctttattc
2941 aataaagttt taatttagta taaacaaaaa aaaaaaaaaa aaaataaaaa aaaaaaaaaa
//