LOCUS BC026279 1079 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens major histocompatibility complex, class II, DM alpha,
mRNA (cDNA clone MGC:23886 IMAGE:4703588), complete cds.
ACCESSION BC026279
VERSION BC026279.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1079)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1079)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: b Column: 10.
FEATURES Location/Qualifiers
source 1..1079
/db_xref="H-InvDB:HIT000040177_08"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23886 IMAGE:4703588"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1079
/gene="HLA-DMA"
/gene_synonym="D6S222E"
/gene_synonym="DMA"
/gene_synonym="HLADM"
/gene_synonym="RING6"
/db_xref="GeneID:3108"
/db_xref="HGNC:HGNC:4934"
/db_xref="MIM:142855"
CDS 16..801
/gene="HLA-DMA"
/gene_synonym="D6S222E"
/gene_synonym="DMA"
/gene_synonym="HLADM"
/gene_synonym="RING6"
/codon_start=1
/product="major histocompatibility complex, class II, DM
alpha"
/protein_id="AAH26279.1"
/db_xref="GeneID:3108"
/db_xref="HGNC:HGNC:4934"
/db_xref="MIM:142855"
/translation="MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTF
LHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDK
EFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVN
WQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWV
PRNALPSDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPCSGD"
BASE COUNT 250 a 298 c 257 g 274 t
ORIGIN
1 gtgtggcaag aaggtatggg tcatgaacag aaccaaggag ctgcgctgct acagatgtta
61 ccacttctgt ggctgctacc ccactcctgg gccgtccctg aagctcctac tccaatgtgg
121 ccagatgacc tgcaaaacca cacattcctg cacacagtgt actgccagga tgggagtccc
181 agtgtgggac tctctgaggc ctacgacgag gaccagcttt tcttcttcga cttttcccag
241 aacactcggg tgcctcgcct gcccgaattt gctgactggg ctcaggaaca gggagatgct
301 cctgccattt tatttgacaa agagttctgc gagtggatga tccagcaaat agggccaaaa
361 cttgatggga aaatcccggt gtccagaggg tttcctatcg ctgaagtgtt cacgctgaag
421 cccctggagt ttggcaagcc caacactttg gtctgttttg tcagtaatct cttcccaccc
481 atgctgacag tgaactggca gcatcattcc gtccctgtgg aaggatttgg gcctactttt
541 gtctcagctg tcgatggact cagcttccag gccttttctt acttaaactt cacaccagaa
601 ccttctgaca ttttctcctg cattgtgact cacgaaattg accgctacac agcaattgcc
661 tattgggtac cccggaacgc actgccctca gatctgctgg agaatgtgct gtgtggcgtg
721 gcctttggcc tgggtgtgct gggcatcatc gtgggcattg ttctcatcat ctacttccgg
781 aagccttgct caggtgactg attcttccag accagagttt gatgccagca gcttcggcca
841 tccaaacaga ggatgctcag atttctcaca tcctgcccag gatctcctct tagggtagaa
901 gaagtctctg ggacatccct ggggtgtgtg tgtagatttc ccacctgggg actctgctgt
961 ccctgggctt gcatcccagg gatcccagag tggcctgcct atcacaacca catcccttcc
1021 ccccacaagg caataaatct catttcttca aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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