LOCUS BC026222 4015 bp mRNA linear HUM 26-MAR-2019
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 2, mRNA (cDNA clone
MGC:21969 IMAGE:4395012), complete cds.
ACCESSION BC026222
VERSION BC026222.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4015)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4015)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
REFERENCE 3 (bases 1 to 4015)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2019) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Mar 26, 2019 this sequence version replaced BC026222.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: b Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..4015
/db_xref="H-InvDB:HIT000040150"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21969 IMAGE:4395012"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4015
/gene="SMARCC2"
/gene_synonym="BAF170"
/gene_synonym="CRACC2"
/gene_synonym="Rsc8"
/db_xref="GeneID:6601"
/db_xref="HGNC:HGNC:11105"
/db_xref="MIM:601734"
CDS 9..3653
/gene="SMARCC2"
/gene_synonym="BAF170"
/gene_synonym="CRACC2"
/gene_synonym="Rsc8"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 2"
/protein_id="AAH26222.1"
/db_xref="GeneID:6601"
/db_xref="HGNC:HGNC:11105"
/db_xref="MIM:601734"
/translation="MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPP
TNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKS
DQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDII
KRHQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPA
SEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKT
LTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREE
EQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTG
KDEDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFF
NGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWG
LINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQQTSASQQMLNFPDKGK
EKPTDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVS
EHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLAS
VVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGI
AGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDE
EKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEG
NLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD
REREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPI
PPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGA
PQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPP
PPPPAPSIIPFGSLADSISINLPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPN
LPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSP
GTVTPVPPPQ"
BASE COUNT 1090 a 1146 c 1047 g 732 t
ORIGIN
1 cggagaagat ggcggtgcgg aagaaggacg gcggccccaa cgtgaagtac tacgaggccg
61 cggacaccgt gacccagttc gacaacgtgc ggctgtggct cggcaagaac tacaagaagt
121 atatacaagc tgaaccaccc accaacaagt ccctgtctag cctggttgta cagttgctac
181 aatttcagga agaagttttt ggcaaacatg tcagcaatgc accgctcact aaactgccga
241 tcaaatgttt cctagatttc aaagcgggag gctccttgtg ccacattctt gcagctgcct
301 acaaattcaa gagtgaccag ggatggcggc gttacgattt ccagaatcca tcacgcatgg
361 accgcaatgt ggaaatgttt atgaccattg agaagtcctt ggtgcagaat aattgcctgt
421 ctcgacctaa catttttctg tgcccggaaa ttgagcccaa actactaggg aaattaaagg
481 acattatcaa gagacaccag ggaacagtca ctgaggataa gaacaatgcc tcccatgttg
541 tgtatcctgt cccggggaat ctagaagaag aggaatgggt acgaccagtc atgaagaggg
601 ataagcaggt tcttctgcac tggggctact atcctgacag ttacgacacg tggatcccag
661 cgagtgaaat tgaggcatct gtggaagatg ctccaactcc tgagaaacct aggaaggttc
721 atgcaaagtg gatcctggac accgacacct tcaatgaatg gatgaatgag gaagactatg
781 aagtaaatga tgacaaaaac cctgtctccc gccgaaagaa gatttcagcc aagacactga
841 cagatgaggt gaacagccca gattcagatc gacgggacaa gaagggggga aactataaga
901 agaggaagcg ctccccctct ccttcaccaa ccccagaagc aaagaagaaa aatgctaaga
961 aaggtccctc aacaccttac actaagtcaa agcgtggcca cagagaagag gagcaagaag
1021 acctgacaaa ggacatggac gagccctcac cagtccccaa tgtagaagag gtgacacttc
1081 ccaaaacagt caacacaaag aaagactcag agtcggcccc agtcaaaggc ggcaccatga
1141 ccgacctgga tgaacaggaa gatgaaagca tggagacgac gggcaaggat gaggatgaga
1201 acagtacggg gaacaaggga gagcagacca agaatccaga cctgcatgag gacaatgtga
1261 ctgaacagac ccaccacatc atcattccca gctacgctgc ctggtttgac tacaatagtg
1321 ttcatgccat tgagcggagg gctctccccg agttcttcaa cggcaagaac aagtccaaga
1381 ctccagagat ctacctggcc tatcgaaact ttatgattga cacttaccga ctgaaccccc
1441 aagagtatct tacctctacc gcctgccgcc gaaacctagc gggtgatgtc tgtgccatca
1501 tgagggtcca tgccttccta gaacagtggg gtcttattaa ctaccaggtg gatgctgaga
1561 gtcgaccaac cccaatgggg cctccgccta cctctcactt ccatgtcttg gctgacacac
1621 catcagggct ggtgcctctg cagcccaaga cacctcagca gacctctgct tcccaacaaa
1681 tgctcaactt tcctgacaaa ggcaaagaga aaccaacaga catgcaaaac tttgggctgc
1741 gcacagacat gtacacaaaa aagaatgttc cctccaagag caaggctgca gccagtgcca
1801 ctcgtgagtg gacagaacag gaaaccctgc ttctcctgga ggcactggaa atgtacaaag
1861 atgactggaa caaagtgtcc gagcatgtgg gaagccgcac acaggacgag tgcatcttgc
1921 attttcttcg tcttcccatt gaagacccat acctggagga ctcagaggcc tccctaggcc
1981 ccctggccta ccaacccatc cccttcagtc agtcgggcaa ccctgttatg agcactgttg
2041 ccttcctggc ctctgtcgtc gatccccgag tcgcctctgc tgctgcaaag tcagccctag
2101 aggagttctc caaaatgaag gaagaggtac ccacggcctt ggtggaggcc catgttcgaa
2161 aagtggaaga agcagccaaa gtaacaggca aggcggaccc tgccttcggt ctggaaagca
2221 gtggcattgc aggaaccacc tctgatgagc ctgagcggat tgaggagagc gggaatgacg
2281 aggctcgggt ggaaggccag gccacagatg agaagaagga gcccaaggaa ccccgagaag
2341 gagggggtgc tatagaggag gaagcaaaag agaaaaccag cgaggctccc aagaaggatg
2401 aggagaaagg gaaagaaggc gacagtgaga aggagtccga gaagagtgat ggagacccaa
2461 tagtcgatcc tgagaaggag aaggagccaa aggaagggca ggaggaagtg ctgaaggaag
2521 tggtggagtc tgagggggaa aggaagacaa aggtggagcg ggacattggc gagggcaacc
2581 tctccaccgc tgctgctgcc gccctggccg ccgccgcagt gaaagctaag cacttggctg
2641 ctgttgagga aaggaagatc aaatctttgg tggccctgct ggtggagacc cagatgaaaa
2701 agttggagat caaacttcgg cactttgagg agctggagac tatcatggac cgggagcgag
2761 aagcactgga gtatcagagg cagcagctcc tggccgacag acaagccttc cacatggagc
2821 agctgaagta tgcggagatg agggctcggc agcagcactt ccaacagatg caccaacagc
2881 agcagcagcc accaccagcc ctgcccccag gctcccagcc tatcccccca acaggggctg
2941 ctgggccacc cgcagtccat ggcttggctg tggctccagc ctctgtagtc cctgctcctg
3001 ctggcagtgg ggcccctcca ggaagtttgg gcccttctga acagattggg caggcagggt
3061 caactgcagg gccacagcag cagcaaccag ctggagcccc ccagcctggg gcagtcccac
3121 caggggttcc cccccctgga ccccatggcc cctcaccgtt ccccaaccaa caaactcctc
3181 cctcaatgat gccaggggca gtgccaggca gcgggcaccc aggcgtggcg ggtaatgctc
3241 ctttgggttt gccttttggc atgccgcctc ctcctcctcc tcctgctcca tccatcatcc
3301 catttggtag tctagctgac tccatcagta ttaacctccc cgctcctcct aacctgcatg
3361 ggcatcacca ccatctcccg ttcgccccgg gcactctccc cccacctaac ctgcctgtgt
3421 ccatggcgaa ccctctacat cctaacctgc cggcgaccac caccatgcca tcttccttgc
3481 ctctcgggcc ggggctcgga tccgccgcag cccaaagccc tgccattgtg gcagctgttc
3541 agggcaacct cctgcccagt gccagcccac tgccagaccc aggcaccccc ctgcctccag
3601 accccacagc cccgagccca ggcacggtca cccctgtgcc acctccacag tgaggagcca
3661 gccagacatc tctccccctc accccctgtg gacatcacgg ttccaggaac agcccttccc
3721 ccaccactgg gaccctcccc agcctggaga gttcatcact acgtaaggaa agctccttcc
3781 gcccctccaa agccctcacc atgcctaaca gaggcatgca tttttatatc agattattca
3841 aggacttctg tttaaaagat gtttataatg tctgggagag aggataggat gggaatgctg
3901 ccctaaagga agggctggtg aaaggtgttt atacaaggtt ctattaacca cttctaaggg
3961 tacacctccc tccaaactac tgcattttct atggattaaa aaaaaaaaaa aaaaa
//