LOCUS BC026218 4724 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone
MGC:21402 IMAGE:4153558), complete cds.
ACCESSION BC026218
VERSION BC026218.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4724)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4724)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: c Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14277674.
FEATURES Location/Qualifiers
source 1..4724
/db_xref="H-InvDB:HIT000040148"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21402 IMAGE:4153558"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4724
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
CDS 105..2909
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/codon_start=1
/product="protocadherin gamma subfamily C, 3"
/protein_id="AAH26218.1"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
/translation="MVPEAWRSGLVSTGRVVGVLLLLGALNKASTVIHYEIPEEREKG
FAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVNDRLDREELCGTLP
SCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVAPGTRFPLESAH
DPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSLQLVLTALD
GGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLDEGPN
GEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPEGA
HCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVP
PGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDI
NDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGR
YFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQ
VLYPRPGGSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLH
TGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSA
PREQKKNLTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTPGP
SLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYR
QVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA
SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
GKAPAGGNGNKKKSGKKEKK"
BASE COUNT 1049 a 1403 c 1261 g 1011 t
ORIGIN
1 gtcggactcg gcgcccagcg cccaagcgct aacccgctga aagtttctca gcgaaatctc
61 agggacgatc tggaccccgc tgagaggaac tgcttttgag tgagatggtc ccagaggcct
121 ggaggagcgg actggtaagc accgggaggg tagtgggagt tttgcttctg cttggtgcct
181 tgaacaaggc ttccacggtc attcactatg agatcccgga ggaaagagag aagggtttcg
241 ctgtgggcaa cgtggtcgcg aaccttggtt tggatctcgg tagcctctca gcccgcaggt
301 tccgggtggt gtctggagct agccgaagat tctttgaggt gaaccgggag accggagaga
361 tgtttgtgaa cgaccgtctg gatcgagagg agctgtgtgg gacactgccc tcttgcactg
421 taactctgga gttggtagtg gagaacccgc tggagctgtt cagcgtggaa gtggtgatcc
481 aggacatcaa cgacaacaat cctgctttcc ctacccagga aatgaaattg gagattagcg
541 aggccgtggc tccggggacg cgctttccgc tcgagagcgc gcacgatccc gatgtgggaa
601 gcaactcttt acaaacctat gagctgagcc gaaatgaata ctttgcgctt cgcgtgcaga
661 cgcgggagga cagcaccaag tacgcggagc tggtgttgga gcgcgccctg gaccgagaac
721 gggagcctag tctccagtta gtgctgacgg cgttggacgg agggacccca gctctctccg
781 ccagcctgcc tattcacatc aaggtgctgg acgcgaatga caatgcgcct gtcttcaacc
841 agtccttgta ccgggcgcgc gtcctggagg atgcaccctc cggcacgcgc gtggtacaag
901 tccttgcaac ggatctggat gaaggcccca acggtgaaat tatttactcc ttcggcagcc
961 acaaccgcgc cggcgtgcgg caactattcg ccttagacct tgtaaccggg atgctgacaa
1021 tcaagggtcg gctggacttc gaggacacca aactccatga gatttacatc caggccaaag
1081 acaagggcgc caatcccgaa ggagcacatt gcaaagtgtt ggtggaggtt gtggatgtga
1141 atgacaacgc cccggagatc acagtcacct ccgtgtacag cccagtaccc gaggatgccc
1201 ctctggggac tgtcatcgct ttgctcagtg tgactgacct ggatgctggc gagaacgggc
1261 tggtgacctg cgaagttcca ccgggtctcc ctttcagcct tacttcttcc ctcaagaatt
1321 acttcacttt gaaaaccagt gcagacctgg atcgggagac tgtgccagaa tacaacctca
1381 gcatcaccgc ccgagacgcc ggaacccctt ccctctcagc ccttacaata gtgcgtgttc
1441 aagtgtccga catcaatgac aaccctccac aatcttctca atcttcctac gacgtttaca
1501 ttgaagaaaa caacctcccc ggggctccaa tactaaacct aagtgtctgg gaccccgacg
1561 ccccgcagaa tgctcggctt tctttctttc tcttggagca aggagctgaa accgggctag
1621 tgggtcgcta tttcacaata aatcgtgaca atggcatagt gtcatcctta gtgcccctag
1681 actatgagga tcggcgggaa tttgaattaa cagctcatat cagcgatggg ggcaccccgg
1741 tcctagccac caacatcagc gtgaacatat ttgtcactga tcgcaatgac aatgcccccc
1801 aggtcctata tcctcggcca ggtgggagct cggtggagat gctgcctcga ggtacctcag
1861 ctggccacct agtgtcacgg gtggtaggct gggacgcgga tgcagggcac aatgcctggc
1921 tctcctacag tctcttggga tcccctaacc agagcctttt tgccataggg ctgcacactg
1981 gtcaaatcag tactgcccgt ccagtccaag acacagattc acccaggcag actctcacgg
2041 tcttgatcaa agacaatggg gagccttcgc tctccaccac tgctaccctc actgtgtcag
2101 taaccgagga ctctcctgaa gcccgagccg agttcccctc tggctctgcc ccccgggagc
2161 agaaaaaaaa tctcaccttt tatctacttc tttctctaat cctggtttct gtggggttcg
2221 tggtcacagt gttcggagta atcatattca aagtttacaa gtggaagcag tctagagacc
2281 tataccgagc cccggtgagc tcactgtacc gaacaccagg gccctccttg cacgcggacg
2341 ccgtgcgggg aggcctgatg tcgccgcacc tttaccatca ggtgtatctc accacggact
2401 cccgccgcag cgacccgctg ctgaagaaac ctggtgcagc cagtccactg gccagccgcc
2461 agaacacgct gcggagctgt gatccggtgt tctataggca ggtgttgggt gcagagagcg
2521 cccctcccgg acagcaagcc ccgcccaaca cggactggcg tttctctcag gcccagagac
2581 ccggcaccag cggctcccaa aatggcgatg acaccggcac ctggcccaac aaccagtttg
2641 acacagagat gctgcaagcc atgatcttgg cgtccgccag tgaagctgct gatgggagct
2701 ccaccctggg agggggtgcc ggcaccatgg gattgagcgc ccgctacgga ccccagttca
2761 ccctgcagca cgtgcccgac taccgccaga atgtctacat cccaggcagc aatgccacac
2821 tgaccaacgc agctggcaag cgggatggca aggccccagc aggtggcaat ggcaacaaga
2881 agaagtcggg caagaaggag aagaagtaac atggaggcca ggccaagagc cacagggcag
2941 cctctcccca accagcccag cttctcctta cctgcaccca ggcctcagag tttcagggct
3001 aacccccaga atactggtag gggccaaggc catgctcccc ttgggaaaca gaaacaagtg
3061 cccagtcagc acctacccct tcccccccag ggggttgaat atgcaaaagc agttccgctg
3121 ggaaccccca tccaatcaac tgctgtaccc atgggggtag tggggttact gtagacacca
3181 agaaccattt gccacacccc gtttagttac agctgaactc ctccatcttc caaatcaatc
3241 aggcccatcc atcccatgcc tccctcctcc ccaccccact ccaacagttc ctctttcccg
3301 agtaaggtgg ttggggtgtt gaagtaccaa gtaacctaca agcctcctag ttctgaaaag
3361 ttggaagggc atcatgacct cttggcctct cctttgattc tcaatcttcc cccaaagcat
3421 ggtttggtgc cagccccttc acctccttcc agagcccaag atcaatgctc aagttttgga
3481 ggacatgatc accatcccca tggtactgat gcttgctgga tttagggagg gcattttgct
3541 accaagcctc ttcccaacgc cctggggacc agtcttctgt tttgtttttc attgtttgac
3601 gtttccactg catgccttga cttcccccac ctcctcctca aacaagagac tccactgcat
3661 gttccaagac agtatggggt ggtaagataa ggaagggaag tgtgtggatg tggatggtgg
3721 gggcatggac aaagcttgac acatcaagtt atcaaggcct tggaggaggc tctgtatgtc
3781 ctcaggggac tgacaacatc ctccagattc cagccataaa ccaataacta ggctggaccc
3841 ttcccactac ataatagggc tcagcccagg cagccagctt tgggctgagc taacaggacc
3901 aatggattaa actggcattt cagtccaagg aagctcgaag caggtttagg accaggtccc
3961 cttgagaggt cagaggggcc tctgtgggtg ctgggtactc cagaggtgcc actggtggaa
4021 gggtcagcgg agccccagca ggaagggtgg gccagccagg ccattcttag tccctgggtt
4081 ggggaggcag ggagctaggg cagggaccaa atgaacagaa agtctcagcc caggatgggg
4141 cttcttcaac agggcccctg ccctcctgaa gcctcagtcc ttcaccttgc caggtgccgt
4201 ttctcttccg tgaaggccac tgcccaggtc cccagtgcgc cccctagtgg ccatagcctg
4261 gttaaagttc cccagtgcct ccttgtgcat agaccttctt ctcccacccc cttctgcccc
4321 tgggtccccg gccatccagc ggggctgcca gagaacccca gacctgccct tacagtagtg
4381 tagcgccccc tccctctttc ggctggtgta gaatagccag tagtgtagtg cggtgtgctt
4441 ttacgtgatg gcgggtgggc agcgggcggc gggctccgcg cagccgtctg tccttgatct
4501 gcccgcggcg gcccgtgttg tgttttgtgc tgtgtccacg cgctaaggcg accccctccc
4561 ccgtactgac ttctcctata agcgcttctc ttcgcatagt cacgtagctc ccaccccacc
4621 ctcttcctgt gtctcacgca agttttatac tctaatattt atatggcttt ttttcttcga
4681 caaaaaaata ataaaacgtt tcttctgaaa aaaaaaaaaa aaaa
//