LOCUS BC026061 2231 bp mRNA linear HUM 26-APR-2004
DEFINITION Homo sapiens PAP associated domain containing 4, mRNA (cDNA clone
MGC:16201 IMAGE:3640197), complete cds.
ACCESSION BC026061
VERSION BC026061.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2231)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2231)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2231
/db_xref="H-InvDB:HIT000258988"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16201 IMAGE:3640197"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2231
/gene="PAPD4"
/gene_synonym="FLJ38499"
/db_xref="GeneID:167153"
CDS 452..1906
/gene="PAPD4"
/gene_synonym="FLJ38499"
/codon_start=1
/product="PAPD4 protein"
/protein_id="AAH26061.1"
/db_xref="GeneID:167153"
/translation="MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQN
ADLSRAVSLQQLTYGNVSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTV
VNQIVPLSGERRYSMPPLFHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQI
LELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCL
VVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCV
EFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLV
LMVLHYLQTLPEPILPSLQKIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLLL
GFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFDGTNTARAVHEKQK
FDMIKDQFLKSWHRLKNKRDLNSILPVRAAVLKR"
misc_feature 1607..1771
/gene="PAPD4"
/gene_synonym="FLJ38499"
/note="PAP_assoc; Region: PAP/25A associated domain"
/db_xref="CDD:pfam03828"
BASE COUNT 686 a 461 c 433 g 651 t
ORIGIN
1 ggcacgaggc tacgccgctt tttcggcgac tttttgctct tccgcttttt gccaccgccc
61 ccaaccttct atatccttgc agcccctacc ttttcttgtg ttgctcctcc cctggcagcc
121 gtgagggggg ttagatctca gccggagccg gagctgggcc tagctgtccc acgggccacc
181 actacctcct ttggttcggg agaaagctac gaccaagtac gcccagctcg ggccttagaa
241 cttctgaacg ggcagtgcgg gaccaaaaga ggaagatagt cttgggaccc ttgcatggtg
301 tttcaaaggg tggtgaagaa ctaaggggct ccagagcttg atatatttct gggaatttgg
361 aatatgctaa actagatttc tgccctagac taaacatctg gctgtggact caatgtagaa
421 gaatacatgt tcacttccag tgaacaagag catgttccca aactcaattt tgggtcgccc
481 acccttcact ccaaatcatc aacaacataa taacttcttt accctgtcac ctactgttta
541 ttcacaccag cagcttatag atgcacaatt caactttcag aatgcagact tgtctagagc
601 tgtgtcatta cagcagctga catatggaaa tgtcagtcca atacagacct cagcttcccc
661 attatttcga ggaaggaaga gattaagcga tgaaaaaaac cttcctcttg acggtaaacg
721 gcaacgtttc cattcacccc accaagagcc aactgtagtt aaccagatag tgcctttatc
781 aggtgaacga agatactcaa tgccaccatt gtttcataca cattatgtac cagatatagt
841 cagatgtgtt ccaccttttc gagaaattgc atttttagaa cctagagaaa tcacactgcc
901 tgaggccaaa gataagttga gtcagcagat actggagtta tttgaaacat gtcagcagca
961 aataagtgat ttaaagaaga aagaactctg tcgaacacag ctgcagagag aaattcagct
1021 gttatttcca caaagcagac tttttttggt tgggtcctct ttaaatggat ttggtacccg
1081 gagcagtgat ggtgatttat gcctagttgt taaggaagaa ccatgttttt ttcaggtaaa
1141 tcagaagact gaagcacggc atatactcac cttagtccat aaacacttct gtactagact
1201 ttcgggctac attgagagac ctcagctgat tcgagcaaaa gtgccaattg tgaagttcag
1261 ggataaagtc agttgtgtgg agtttgactt gaatgtaaac aatattgttg gaataagaaa
1321 cacattcctt ctcagaactt atgcatacct tgaaaatcga gttcgtccgt tagtgctggt
1381 gattaagaag tgggcaagtc accatcagat aaatgatgcc agtcgtggta ctttaagcag
1441 ctatagtctt gtattgatgg ttttgcacta tttacaaacc ctacctgaac ccatccttcc
1501 atccctccaa aaaatttacc cagagtcttt tagtcctgct atacagctgc accttgtaca
1561 tcaagctcca tgtaatgttc ctccttacct ctcaaagaat gaatcaaacc ttggggacct
1621 cttactgggc tttcttaaat attatgctac agaatttgac tggaatagtc aaatgatttc
1681 agttcgtgaa gccaaagcca ttccaaggcc tgatggtatt gaatggagaa ataaatacat
1741 ctgtgtagaa gaaccttttg atggaacaaa tacagccaga gcagtgcacg aaaagcagaa
1801 atttgatatg atcaaggatc aatttttaaa gtcatggcac agattgaaaa acaagagaga
1861 tttgaacagt atactacctg taagagctgc tgtcctgaaa agataactgg cctctatttc
1921 ttaataaatt cttccaagaa ataaagaaca atagtttcat cataatacat tatgtttacc
1981 tccatcatag ttgctttttt catagttctt gttttcatgt tttattttta aaaagacata
2041 taaagattgc atattttatt atgacatttc ctaataaacc cctttgattt aaaaatgtat
2101 ttttaaaaat gtttacattg atgatgagta atattgcatg tgttttcagg tgatcagata
2161 aaatatattt tgggaaatta actgaacaaa taaaaagttt ttgatataac ttcaaaaaaa
2221 aaaaaaaaaa a
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