LOCUS BC026025 1541 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAB20, member RAS oncogene family, mRNA (cDNA clone
MGC:39156 IMAGE:4636491), complete cds.
ACCESSION BC026025
VERSION BC026025.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1541)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1541)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: f Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8923400.
FEATURES Location/Qualifiers
source 1..1541
/db_xref="H-InvDB:HIT000040070"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39156 IMAGE:4636491"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1541
/gene="RAB20"
/gene_synonym="FLJ20429"
/db_xref="GeneID:55647"
/db_xref="HGNC:HGNC:18260"
CDS 215..919
/gene="RAB20"
/gene_synonym="FLJ20429"
/codon_start=1
/product="RAB20, member RAS oncogene family"
/protein_id="AAH26025.1"
/db_xref="GeneID:55647"
/db_xref="HGNC:HGNC:18260"
/translation="MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLK
QWRSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTA
SKDCLFAIVGNKVDLTEEGALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKK
ILKYKMLDEQDVPAAEQMCFETSAKTGYNVDLLFETLFDLVVPMILQQRAERPSHTVD
ISSHKPPKRTRSGCCA"
BASE COUNT 342 a 414 c 463 g 322 t
ORIGIN
1 gtgggctccg tgctctgcac ccagctcctt cccgggcgcg cacacgcgct tcctctcttg
61 agctcccggg cgtccggagg cgaaggtccc ggagcgttca cgagaatccg ggtcccggcg
121 agtccggggt ccgctcctcc agctgcgccc agggcgcacg agccggccag cctcggggag
181 agggcgcggg ggcgctgggg gttcttacgg gaagatgagg aagcccgaca gcaagatcgt
241 gctcctgggg gacatgaacg tggggaagac gtcgctgctg cagcggtata tggagcggcg
301 cttcccggac acggtcagca cggtgggcgg cgccttctac ctgaagcagt ggcgctccta
361 caacatctcc atctgggaca ccgcagggcg ggagcagttc cacggcctgg gctccatgta
421 ctgccggggg gcggccgcca tcatcctcac ctatgatgtg aatcaccggc agagcctggt
481 ggagctggag gaccggttcc tgggcctgac agacacagcc agcaaagact gcctcttcgc
541 catcgtgggg aacaaagtgg acctcactga ggagggggcc ttggcgggcc aggagaagga
601 agagtgcagt cccaatatgg acgctgggga ccgtgtctcc ccaagggcac ctaagcaggt
661 gcagctggag gatgcggtgg ccctttataa aaagatcctc aagtacaaga tgctggatga
721 gcaggatgtg ccggccgctg agcaaatgtg ctttgagacc agcgccaaga ccggctacaa
781 tgtggacctc ctgtttgaga ccctctttga cctggtggtg ccaatgatct tacagcagag
841 agctgagagg ccgtcacaca cagtggatat atccagtcat aagccaccca agaggaccag
901 atctgggtgt tgtgcctgac tttcgagggc ctcctggact cagactgtgc atgttgggaa
961 ggggtctgac caggcaagct gtgatctgaa aggagcaagg aacagcaagg aattattttc
1021 cagaatgaca cccgcagcag aatgttggag tggaaatgat ggctggctat gaagaggagg
1081 tcaacgtgtg tggtctcctc agtctctgtc agaggggtgg ggaggtggga aacaggaatc
1141 ctctgcaaag cccaatctgc agagtcgaga cccctggtgc tctctgcccc gctgcctggc
1201 actggtcctt tgcagccagc caccaacggc ccccttgccc ttgcagaggc agaagcctgc
1261 gtctgcacct gcacctctga ccgtttcagc accctgggtt gttaccacgt cctacaactc
1321 tgacatttct tgttctcaag cgtttctctt cactgtgagt tgtctttggt cctcccactt
1381 ggtacttgta tcttgatgct ttataatcct gactctcgac gtgttcattt atacaaaatc
1441 aggaataact ttgtttttat actgattgca gcaatgttgg ctacatgtat tattaaagag
1501 gatttttgga ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//