LOCUS BC025964 1516 bp mRNA linear HUM 29-JUN-2004 DEFINITION Homo sapiens chromodomain helicase DNA binding protein 8, mRNA (cDNA clone IMAGE:3534141), partial cds. ACCESSION BC025964 VERSION BC025964.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1516) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1516) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (18-MAR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: a Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..1516 /db_xref="H-InvDB:HIT000091140" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3534141" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..1516 /gene="CHD8" /gene_synonym="HELSNF1" /gene_synonym="KIAA1564" /db_xref="GeneID:57680" CDS <1..1357 /gene="CHD8" /gene_synonym="HELSNF1" /gene_synonym="KIAA1564" /codon_start=2 /product="CHD8 protein" /protein_id="AAH25964.1" /db_xref="GeneID:57680" /translation="PNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSG KWPSSRRSQEMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEEASAV STAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHKLMANGVMGDGHPLFHKKKGNR KKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFA VDPRFLAYMEDRRKQKWQRCKKNNKAELNCLGMEPVQTANSRNGKKGHHTETVFNRVL PGPIAPESSKKRARRMRPDLSKMMALMQGGSTGSLSLHNTFQHSSSGLQSVSSLGHSS ATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHPHPHHHHHHHPGLRAPGYPSSPVT TASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSERDFSLIDDPMMPANSDSSEDAD D" BASE COUNT 434 a 358 c 403 g 321 t ORIGIN 1 cccaaatgaa gatggagaac aaatgacccc tgagcttctg ctactgcagg aaagacaaag 61 agcctctgag tggcccaagg atcgtgtcct gataaaccgt attgacctcg tctgccaggc 121 tgtactctca gggaagtggc cttctagccg taggagccag gaaatggtaa caggaggaat 181 tttggggcca ggcaaccact tgctagacag tccctcattg actcctggag aatatggtga 241 ctctccagtc cccacaccac gaagtagtag tgcagcttcc atggcagagg aggaagcatc 301 tgcagtcagc acagcggcag cccagttcac caaacttcgc cgaggcatgg atgaaaagga 361 gtttacagtt caaatcaaag atgaggaagg attgaagtta acattccaga agcacaagtt 421 gatggcgaat ggagtaatgg gagatggaca tccactgttt cataagaaga aggggaacag 481 aaagaagcta gtagagctgg aggtggagtg catggaagag cctaatcacc ttgatgtgga 541 cctggagacc cggatccctg tcatcaataa ggtggatggt actttgctgg tgggtgagga 601 tgcccctcgc cgggctgaac tggagatgtg gttacagggt catccagagt ttgctgttga 661 tccccgattt ctagcgtata tggaggatcg cagaaaacag aagtggcaaa gatgtaaaaa 721 aaataataag gcagaattga actgtttggg aatggaacca gtacagacag ctaactctag 781 aaatgggaaa aagggtcatc acactgaaac ggtgttcaac cgggttttgc cagggcctat 841 tgcaccagag agcagcaaga agcgggcccg taggatgcga ccagaccttt ctaagatgat 901 ggccctcatg cagggtggaa gcactgggtc tctatctctg cataacacgt tccaacacag 961 cagtagtggc ctacagtctg tgtcatcttt gggtcacagc agtgccactt ctgcatcttt 1021 gccttttatg ccatttgtga tgggtggtgc accatcatcc cctcatgtag actccagcac 1081 catgcttcat caccaccacc accaccccca cccccaccat caccaccatc accatccagg 1141 cttgagagcc cctggctacc cctcttcacc agtgactacc gcctctggta ctaccttgcg 1201 gttgccacca ctgcaacctg aggaggatga cgatgaggat gaagaagatg atgatgactt 1261 atctcagggc tatgatagct cagaaaggga cttctcactc attgatgatc ctatgatgcc 1321 agctaactca gactccagtg aagatgctga tgactgaagc cccagcatgg gccccattgc 1381 ttgggcggct gctgtatttt catttactct ggcccttgga ctatggaaac gtgggagggg 1441 caggggagat gtggggaagt ccaggactcc aggaggtgaa aaggaaaaaa aaaaaaaaaa 1501 aaaaaaaaaa aaaaaa //