LOCUS BC025372 1981 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calponin 3, acidic, mRNA (cDNA clone MGC:1775
IMAGE:3505668), complete cds.
ACCESSION BC025372
VERSION BC025372.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1981)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1981)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC025372.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: d Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47080096.
FEATURES Location/Qualifiers
source 1..1981
/db_xref="H-InvDB:HIT000039910"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1775 IMAGE:3505668"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1981
/gene="CNN3"
/db_xref="GeneID:1266"
/db_xref="HGNC:HGNC:2157"
/db_xref="MIM:602374"
CDS 214..1203
/gene="CNN3"
/codon_start=1
/product="calponin 3, acidic"
/protein_id="AAH25372.1"
/db_xref="GeneID:1266"
/db_xref="HGNC:HGNC:2157"
/db_xref="MIM:602374"
/translation="MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSI
GPNFQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHD
IFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAG
QSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAG
MLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAP
TEPVIHNGSQGTGTNGSEISDSDYQAEYPDEYHGEYQDDYPRDYQYSDQGIDY"
BASE COUNT 586 a 427 c 425 g 543 t
ORIGIN
1 cgggtgcttc gcagcggagc tcgaggctct gtagcaccca gttggaccca gtcgcccagg
61 caccgcccgc gccccgcggc cgtctcctgc gcctcccaga agagggagtt cgagcatccc
121 ccgcggcggc cactcctcgg ggccaggagc ggggaagcga agtgcgagag accccggacc
181 ccagcgctgt ctcttcccgc cgcccgaacc accatgaccc acttcaacaa gggcccttcc
241 tatgggctct cggccgaagt caagaacaag attgcttcca agtatgatca tcaggcagaa
301 gaagatcttc gcaattggat agaagaggtg acaggcatga gcattggccc caacttccag
361 ctgggcttaa aggatggcat catcctctgc gaacttataa acaagctaca gccaggctca
421 gtgaagaagg tcaacgagtc ctcactgaac tggcctcagt tggagaatat tggcaacttt
481 attaaagcta ttcaggctta tggtatgaag ccacatgaca tattcgaagc aaatgatctt
541 tttgagaatg gaaacatgac ccaggttcag actactctgg tggctctagc aggtctggct
601 aaaacaaaag gattccatac aaccattgac attggagtta agtatgcaga aaaacaaaca
661 agacgttttg atgaaggaaa attaaaagct ggccaaagtg taattggtct gcagatggga
721 accaacaaat gtgccagcca ggcaggtatg acagcttacg ggactaggag gcatctttat
781 gatcccaaaa tgcaaactga caaacctttt gaccagacca caattagtct gcagatgggc
841 actaataaag gagccagcca ggcagggatg ttagcaccag gtaccagaag agacatctat
901 gatcagaagc taacattaca gccggtggac aactcgacaa tttccctaca gatgggtacc
961 aacaaagttg cttcccagaa aggaatgagt gtgtatgggc ttgggcggca agtatatgat
1021 cccaaatact gtgctgctcc tacagaacct gtcattcaca acggaagcca aggaacagga
1081 acaaatggtt cggaaatcag tgatagtgat tatcaggcag aataccctga tgagtatcat
1141 ggcgagtacc aggatgacta ccccagagat taccaatata gcgaccaagg cattgattat
1201 tagatccaca cagaaggagc tcagtattta gtcctttgtt tttattcagt gagaaccaag
1261 ctagccttga gtaattttta tcttgtcttc ctaaaacact attaagctta ttgtactttt
1321 aagaaaaatt gccttacgta cattcctttt tcctttttct gcctcttccc tcaatagttg
1381 ccttttagtg ctgtaatagt taaatcctac agcataatca ataactcgca tatgaagtaa
1441 aaaggaatac tgtgaaaggg gagtactctt gtacagccag ttcttttatg caaaaatctg
1501 tgcattttta caatcttata ttaaactggt attttcaaac aataggaaac tttttttttt
1561 tttttttttt acagtttagt gtatctggtt tctacatgga agactaaact catgcttatt
1621 gctaaatgtg gtctttgcca actaaattta agatgcagca ttttagaaat ttacatatca
1681 atgtttctac agtattgttt gctaattttt aaataaagtc atgatcagtg tgcatttgtg
1741 attatatgtg tactcattct cttacctagc gaacaagatc ttttcagagt ggtgtttcta
1801 aaagagcatg tacaaaagtg gcctgtggac atttaggcct gggtgatgca tttgctcttc
1861 ctgtttgtgc caatgtatca atgtagagtt gctctgtttt cttcaactgt atttattgct
1921 gcatttctca gcataaactt atcccattgt attttttata aataaaaaaa aaaaaaaaaa
1981 a
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