LOCUS BC025296 2039 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ornithine decarboxylase 1, mRNA (cDNA clone MGC:39254
IMAGE:5088190), complete cds.
ACCESSION BC025296
VERSION BC025296.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2039)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2039)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: m Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505488.
FEATURES Location/Qualifiers
source 1..2039
/db_xref="H-InvDB:HIT000039888"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39254 IMAGE:5088190"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2039
/gene="ODC1"
/db_xref="GeneID:4953"
/db_xref="HGNC:HGNC:8109"
/db_xref="MIM:165640"
CDS 302..1687
/gene="ODC1"
/codon_start=1
/product="ornithine decarboxylase 1"
/protein_id="AAH25296.1"
/db_xref="GeneID:4953"
/db_xref="HGNC:HGNC:8109"
/db_xref="MIM:165640"
/translation="MNNFGNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVAD
LGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLG
VPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDS
KAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCV
FDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEPG
RYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHA
HVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVA
AASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFPPEVEEQDASTLPVSCAWESGMKRH
RAACASASINV"
BASE COUNT 519 a 442 c 531 g 547 t
ORIGIN
1 ccgccgcccc tctgccagca gctccggcgc cacctcgggc cggcgtctcc ggcgggcggg
61 agccaggcgc tgacgggcgc ggcgggggcg gccgagcgct cctgcggctg cgactcaggc
121 tccggcgtct gcgcttcccc atggggctgg cctgcggcgc ctgggcgctc tgagattgtc
181 actgctgttc caagggcaca cgcagaggga tttggaattc ctggagagtt gcctttgtga
241 gaagctggaa atatttcttt cgattccatc tcttagtttt ccataggaac atcaagaaat
301 catgaacaac tttggtaatg aagagtttga ctgccacttc ctcgatgaag gttttactgc
361 caaggacatt ctggaccaga aaattaatga agtttcttct tctgatgata aggatgcctt
421 ctatgtggca gacctgggag acattctaaa gaaacatctg aggtggttaa aagctctccc
481 tcgtgtcacc cccttttatg cagtcaaatg taatgatagc aaagccatcg tgaagaccct
541 tgctgctacc gggacaggat ttgactgtgc tagcaagact gaaatacagt tggtgcagag
601 tctgggggtg cctccagaga ggattatcta tgcaaatcct tgtaaacaag tatctcaaat
661 taagtatgct gctaataatg gagtccagat gatgactttt gatagtgaag ttgagttgat
721 gaaagttgcc agagcacatc ccaaagcaaa gttggttttg cggattgcca ctgatgattc
781 caaagcagtc tgtcgtctca gtgtgaaatt cggtgccacg ctcagaacca gcaggctcct
841 tttggaacgg gcgaaagagc taaatatcga tgttgttggt gtcagcttcc atgtaggaag
901 cggctgtacc gatcctgaga ccttcgtgca ggcaatctct gatgcccgct gtgtttttga
961 catgggggct gaggttggtt tcagcatgta tctgcttgat attggcggtg gctttcctgg
1021 atctgaggat gtgaaactta aatttgaaga gatcaccggc gtaatcaacc cagcgttgga
1081 caaatacttt ccgtcagact ctggagtgag aatcatagct gagcccggca gatactatgt
1141 tgcatcagct ttcacgcttg cagttaatat cattgccaag aaaattgtat taaaggaaca
1201 gacgggctct gatgacgaag atgagtcgag tgagcagacc tttatgtatt atgtgaatga
1261 tggcgtctat ggatcattta attgcatact ctatgaccac gcacatgtaa agccccttct
1321 gcaaaagaga cctaaaccag atgagaagta ttattcatcc agcatatggg gaccaacatg
1381 tgatggcctc gatcggattg ttgagcgctg tgacctgcct gaaatgcatg tgggtgattg
1441 gatgctcttt gaaaacatgg gcgcttacac tgttgctgct gcctctacgt tcaatggctt
1501 ccagaggccg acgatctact atgtgatgtc agggcctgcg tggcaactca tgcagcaatt
1561 ccagaacccc gacttcccac ccgaagtaga ggaacaggat gccagcaccc tgcctgtgtc
1621 ttgtgcctgg gagagtggga tgaaacgcca cagagcagcc tgtgcttcgg ctagtattaa
1681 tgtgtagata gcactctggt agctgttaac tgcaagttta gcttgaatta agggatttgg
1741 ggggaccatg taacttaatt actgctagtt ttgaaatgtc tttgtaagag tagggtcgcc
1801 atgatgcagc catatggaag actaggatat gggtcacact tatctgtgtt cctatggaaa
1861 ctatttgaat atttgtttta tatggatttt tattcactct tcagacacgc tactcaagag
1921 tgcccctcag ctgctgaaca agcatttgta gcttgtacaa tggcagaatg ggccaaaagc
1981 ttagtgttgt gacctgtttt taaaataaag tatcttgaaa taaaaaaaaa aaaaaaaaa
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