LOCUS BC025264 1763 bp mRNA linear HUM 02-DEC-2004
DEFINITION Homo sapiens YTH domain family, member 1, mRNA (cDNA clone
IMAGE:5087992), partial cds.
ACCESSION BC025264
VERSION BC025264.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1763)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1763)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: m Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377749.
FEATURES Location/Qualifiers
source 1..1763
/db_xref="H-InvDB:HIT000091010"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5087992"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene <1..1763
/gene="YTHDF1"
/gene_synonym="C20orf21"
/gene_synonym="FLJ20391"
/db_xref="GeneID:54915"
CDS <1..1511
/gene="YTHDF1"
/gene_synonym="C20orf21"
/gene_synonym="FLJ20391"
/codon_start=3
/product="YTHDF1 protein"
/protein_id="AAH25264.1"
/db_xref="GeneID:54915"
/translation="SYYPPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMH
DAVFGQPGGLGNNIYQHRFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLG
GTVVDGQPGFHSDTLSKAPGMNSLEQGMVGLKIGDVSSSAVKTVGSVVSSVALTGVLS
GNGGTNVNMPVSKPTSWAAIASKPAKPQPKMKTKSGPVMGGGLPPPPIKHNMDIGTWD
NKGPVPKAPVPQQAPSPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRN
RNAAFGQSGGAGSDSNSPGNVQPNSAPSVESHPVLEKLKAAHSYNPKEFEWNLKSGRV
FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGV
AEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRD
TQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNKQ"
BASE COUNT 432 a 495 c 466 g 370 t
ORIGIN
1 ccagctatta cccgccgtcc attggatttc cttactccct caatgaggct ccgtggtcta
61 ctgcagggga ccctccgatt ccatacctca ccacctacgg acagctcagt aacggagacc
121 atcattttat gcacgatgct gtttttgggc agcctggggg cctggggaac aacatctatc
181 agcacaggtt caattttttc cctgaaaacc ctgcgttctc agcatggggg acaagtgggt
241 ctcaaggtca gcagacccag agctccgcgt atgggagcag ctacacctac cccccgagct
301 ccctgggtgg cacggtggtt gatgggcagc caggctttca cagcgacacc ctcagcaagg
361 cccccgggat gaacagcctg gagcagggca tggttggcct gaagattggg gacgtcagct
421 cctccgctgt caagacggtg ggctctgtcg tcagcagcgt ggcactgact ggtgtccttt
481 ctggcaacgg tgggacaaat gtgaacatgc cagtttcaaa gccgacctcg tgggctgcca
541 ttgccagcaa gcctgcaaaa ccacagccta aaatgaaaac aaagagcggg cctgtcatgg
601 ggggtgggct gccccctcca cccataaagc ataacatgga cattggcacc tgggataaca
661 aggggcctgt gccgaaggcc ccagtccccc agcaggcacc ctctccacag gctgccccac
721 agccccagca ggtggctcag cctctcccag cacagccccc agctttggct caaccgcagt
781 atcagagccc tcagcagcca ccccagaccc gctgggttgc cccacgcaac agaaacgcgg
841 cgtttgggca gagcggaggg gctggcagcg atagcaactc tcctggaaac gtccagccta
901 attctgcccc cagcgtcgaa tcccaccccg tccttgaaaa actgaaggct gctcacagct
961 acaacccgaa agagtttgag tggaatctga aaagcgggcg tgtgttcatc atcaagagct
1021 actctgagga cgacatccac cgctccatta agtactccat ctggtgtagc acagagcacg
1081 gcaacaagcg cctggacagc gccttccgct gcatgagcag caaggggccc gtctacctgc
1141 tcttcagcgt caatgggagt gggcattttt gtggggtggc cgagatgaag tcccccgtgg
1201 actacggcac cagtgccggg gtctggtctc aggacaagtg gaaggggaag tttgatgtcc
1261 agtggatttt tgttaaggat gtacccaata accagctccg gcacatcagg ctggagaata
1321 acgacaacaa accggtcaca aactcccggg acacccagga ggtgccctta gaaaaagcca
1381 agcaagtgct gaaaattatc agttcctaca agcacacaac ctccatcttc gacgactttg
1441 ctcactacga gaagcgccag gaggaggagg aggtggtgcg caaggaacgg cagagtcgaa
1501 acaaacaatg agggcgaacc agtttcttac atgttctaac gtttgacttt gaaaacagtt
1561 taaaacacgt gtgcttggtc agctccagtg tgtcgtcccg tgcgggggtt gagtgttgca
1621 tctttgcctt tcttgtcgtt gatttttgcc cagatggatc tgcatttatt tgtacttttt
1681 ctatgtatta taatcctgta gaagtcacta ataaaggagt attttttttg tcagcttatc
1741 aatcaaaaaa aaaaaaaaaa aaa
//