LOCUS BC025244 1704 bp mRNA linear HUM 25-AUG-2005 DEFINITION Homo sapiens SHANK-associated RH domain interactor, mRNA (cDNA clone MGC:39108 IMAGE:4907493), complete cds. ACCESSION BC025244 VERSION BC025244.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1704) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1704) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: l Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31542518. FEATURES Location/Qualifiers source 1..1704 /db_xref="H-InvDB:HIT000039858" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39108 IMAGE:4907493" /tissue_type="Pancreas, epithelioid carcinoma" /clone_lib="NIH_MGC_42" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1704 /gene="SHARPIN" /gene_synonym="DKFZP434N1923" /gene_synonym="SIPL1" /db_xref="GeneID:81858" CDS 485..1465 /gene="SHARPIN" /gene_synonym="DKFZP434N1923" /gene_synonym="SIPL1" /codon_start=1 /product="SHARPIN protein" /protein_id="AAH25244.1" /db_xref="GeneID:81858" /translation="MAPPAGGAAAAASDLGSAAVLLAVHAAVRPLGAGPDAEAQLRRL QLSADPERPGRFRLELLGAGPGAVNLEWPLESVSYTIRGPTQHELQPPPGGPGTLSLH FLNPQEAQRWAVLVRGATVEGQNGSKSNSPPALGPEACPVSLPSPPEASTLKGPPPEA DLPRSPGNLTEREELAGSLARAIAGGDEKGAAQVAAVLAQHRVALSVQLQEACFPPGP IRLQVTLEDAASAASAASSAHVALQVHPHCTVAALQEQVFSELGFPPAVQRWVIGRCL CVPERSLASYGVRQDGDPAFLYLLSAPREAPAQLVLSFLHLHQCPRPPWL" BASE COUNT 293 a 582 c 551 g 278 t ORIGIN 1 gtgtgggcgt ggcgggggct ggggtctgcg ggcgaaggtg gtagcccatt ggaggtcccg 61 ggagcgaagt ccagctgccg ttaggcgctg ggatagtcgc acgctggatg catctacgtc 121 cgccgagccc ctggggcgaa gaggccgcgt ccgccttcag ttgtggccgg tgcttcgccc 181 cctgaccctt cgcccccaaa gaccagctct aacgtgagcg cctcggccgc cctgccccag 241 cctcgtacac gccgccagcc tcgcccagcc ggtgtccgga gaccctcggg ccgtgtccat 301 ttgtgggcaa agccagcggg gcaggcttgg ccagagtgca ccactcggcg ccgtcccagg 361 cccgacgctc tgggcgcgcc cggaacccca ggttcgcggc ccgtgtttcc gaccggcgga 421 gggggctcag cggcccgatc ccacggaagc gcgctcggag gggtgggacc cggccggacc 481 ggagatggcg ccgccagcgg gcggggcggc ggcggcggcc tcggacttgg gctccgccgc 541 agtgctcttg gctgtgcacg ccgcggtgag gccgctgggc gccgggccag acgccgaggc 601 acagctgcgg aggctgcagc tgagcgcgga ccctgagagg cctgggcgct tccggctgga 661 gctgctgggc gcgggacctg gggcggttaa tttggagtgg cccctggagt cagtttccta 721 caccatccga ggccccaccc agcacgagct acagcctcca ccaggagggc ctggaaccct 781 cagcctgcac ttcctcaacc ctcaggaagc tcagcggtgg gcagtcctag tccgaggtgc 841 caccgtggaa ggacagaatg gcagcaagag caactcacca ccagccttgg gcccagaagc 901 atgccctgtc tccctgccca gtcccccgga agcctccaca ctcaagggcc ctccacctga 961 ggcagatctt cctaggagcc ctggaaactt gacggagaga gaagagctgg cagggagcct 1021 ggcccgggct attgcaggtg gagacgagaa gggggcagcc caagtggcag ccgtcctggc 1081 ccagcatcgt gtggccctga gtgttcagct tcaggaggcc tgcttcccac ctggccccat 1141 caggctgcag gtcacacttg aagacgctgc ctctgccgca tccgccgcgt cctctgcaca 1201 cgttgccctg caggtccacc cccactgcac tgttgcagct ctccaggagc aggtgttctc 1261 agagctcggt ttcccgccag ccgtgcaacg ctgggtcatc ggacggtgcc tgtgtgtgcc 1321 tgagcgcagc cttgcctctt acggggttcg gcaggatggg gaccctgctt tcctctactt 1381 gctgtcagct cctcgagaag ccccagccca gctggtcctg tccttcctgc accttcatca 1441 atgccccaga ccgccctggc tgtgagatgt gtagcaccca gaggccctgc acttgggacc 1501 cccttgctgc agcttccacc tagcagccac cagaggttac aaggggagag tggcccttcc 1561 ctcacaagtc cgacatctcc aggcccccac tgaactccgg ggacctctac tgactgcttg 1621 ctgggacagt caccagggtt ggggggaagg gccacaaaat gaaaccatta aagaccctta 1681 agagccaaaa aaaaaaaaaa aaaa //