LOCUS BC025239 1760 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens low density lipoprotein receptor-related protein 11,
mRNA (cDNA clone IMAGE:4858324), complete cds.
ACCESSION BC025239
VERSION BC025239.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1760)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1760)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: g Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222347
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1760
/db_xref="H-InvDB:HIT000258975"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4858324"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1760
/gene="LRP11"
/gene_synonym="bA350J20.3"
/gene_synonym="FLJ14735"
/gene_synonym="MANSC3"
/db_xref="GeneID:84918"
CDS 317..1030
/gene="LRP11"
/gene_synonym="bA350J20.3"
/gene_synonym="FLJ14735"
/gene_synonym="MANSC3"
/codon_start=1
/product="LRP11 protein"
/protein_id="AAH25239.1"
/db_xref="GeneID:84918"
/translation="MASVAQESAGSQRRLPPRHGALRGLLLLCLWLPSGRAALPPAAP
LSELHAQLSGVEQLLEEFRRQLQQERPQEELELELRAGGGPQEDCPGRGSGGYSAMPD
AIIRTKDSLAAGASFLRAPAAVRGWRQCVAACCSEPRCSVAVVELPRRPAPPAAVLGC
YLFNCTARGRNVCKFALHSGYSSYSLSRAPDGAALATARASPRQGKRATEGPALARAL
ETRSALAKLEAKHTRAKLF"
BASE COUNT 326 a 537 c 597 g 300 t
ORIGIN
1 gatcaacgcc gaggccgact cgtcgccacc cagcgcgccg caggccgggg cggagaggcg
61 cagggcgctg ggcagtctcc ggcgagggca aggagcggtg cccggctggg ccggctatgt
121 ctcccgctac tgcggttccc gccggcgccc gcgacctcgg gggagcagcc gggttcgggg
181 gcgccgcgct gtgaggccgg ggcctagagc cagccgcggc cgcgcaggag gggcccaggg
241 cccgcgctcg cccgcgtccc cgccttcctc ccgcgctcag ccccgcctcg gctcgctgcc
301 cttggctctc gtcgccatgg cctccgtcgc ccaggagagc gcgggctcgc agcgccggct
361 accgccgcgt cacggggcgc tgcgcgggct gctactgctc tgcctgtggc tgccaagcgg
421 ccgtgcggcc ttgccgcccg cggcgccgct gtccgaactg cacgcgcagc tgtcgggcgt
481 ggagcagctg ctggaggagt tccgccggca actgcagcag gagcggcctc aggaggagct
541 ggagctggag ctgcgcgcgg gcggcggccc ccaggaggac tgcccgggcc ggggcagcgg
601 cggctacagc gcaatgcctg acgccatcat ccgcaccaag gactccctgg cggcgggtgc
661 cagcttcctg cgggcgccgg cggccgtgcg gggctggcgg caatgcgtgg cggcctgctg
721 ctccgagccg cgctgctccg tggccgtggt ggagctgccc cggcgccccg cgcccccggc
781 agccgtgctc ggctgctacc tcttcaactg cacggcgcgc ggccgcaacg tctgcaagtt
841 cgcgctgcac agcggctaca gcagctacag cctcagccgc gcgccggacg gcgccgccct
901 ggccaccgcg cgcgcctcgc cccggcaggg taagcgcgcg actgaggggc cggccttggc
961 cagagcgctc gagacccgca gcgccctcgc caagttggaa gcgaaacaca ctcgtgccaa
1021 gttattttag ccgcgggcac ccagaagagt ttctggcatg ggtttctctg tcttagggaa
1081 gaggaagccc agtagtttgg cagaagcggg cgggcgggcg cggtgacgtg ctactggaat
1141 ttttctaggc ttgaagagaa aggctgatct gagaggattc gtggaaatat gacttaaaag
1201 gggagaaatg ctgagagaaa aaagtttgtt ttagtctcat gggttgtata aggcatggtt
1261 tgtgttaagt aattgcaaga gcaaaatcta attagatgcc gggcttctcg taacacccac
1321 tcctgtttct tgacgtggct ctcctgactt tgcctgcggt ggctttcatc atacaaaaat
1381 gggaggaaaa ctactggtcc cttttataaa aagtgaaaag aggggacttg attttcgttg
1441 aaaataagaa actttaaggc cgggcgtggt ggcttatgcc tgtaatccca gcactttggg
1501 aggccgagga gggcggatca cctgaggtca ggagtttgag acctgcctga ccaatgtgat
1561 gaaaccccat ctctactaaa aatacaaaaa ttagccagag ctggtggcat gcgcctgtaa
1621 tcccagctat tcgggaggct gaggcaggag aatcgcttga acctaggagg cggaggttgc
1681 agtgagccga gatcgcgcca ttgcactcca gcctgggcaa caagagcgaa actccgtctt
1741 aaaaaaaaaa aaaaaaaaaa
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