LOCUS BC025178 1300 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide N, mRNA (cDNA clone MGC:34180 IMAGE:4158469), complete cds. ACCESSION BC025178 VERSION BC025178.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1300) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1300) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 52 Row: a Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 29540556. FEATURES Location/Qualifiers source 1..1300 /db_xref="H-InvDB:HIT000039848" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34180 IMAGE:4158469" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1300 /gene="SNRPN" /gene_synonym="HCERN3" /gene_synonym="RT-LI" /gene_synonym="SM-D" /gene_synonym="SMN" /gene_synonym="SNRNP-N" /gene_synonym="SNURF-SNRPN" /db_xref="GeneID:6638" /db_xref="HGNC:HGNC:11164" /db_xref="MIM:182279" CDS 433..1155 /gene="SNRPN" /gene_synonym="HCERN3" /gene_synonym="RT-LI" /gene_synonym="SM-D" /gene_synonym="SMN" /gene_synonym="SNRNP-N" /gene_synonym="SNURF-SNRPN" /codon_start=1 /product="small nuclear ribonucleoprotein polypeptide N" /protein_id="AAH25178.1" /db_xref="GeneID:6638" /db_xref="HGNC:HGNC:11164" /db_xref="MIM:182279" /translation="MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD CDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG GPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPP GMRPPPPGIRGPPPPGMRPPRP" BASE COUNT 331 a 330 c 345 g 294 t ORIGIN 1 atctgtctga ggagcggtca gtgacgcgat ggagcgggca agggatcgct tacacctgag 61 acgaactaca gaacagcacg taccagaggt ggaagtccaa gtcaaacgca gaaggactgc 121 ctcactgagc aaccaagagt gtcagttgta cccgaggcgt tctcagcagc agcaagtacc 181 tgtggtggat ttccaggctg aactgaggca ggcattctta gctgagacac caagaggtgg 241 ttaaagccat attggagtag cgaggaatct gattccaagc aaaaaccagg ctccatctac 301 tctttgaagc ttctgcccag cttgcattgt ttctaggaga acctgcgtca tacctttatc 361 tatagccttc ccctaggtct tcagaagcat caagttttaa ctgtggacat tggatttggt 421 ggaacagcaa tcatgactgt tggcaagagt agcaagatgc tgcagcacat tgactataga 481 atgagatgta tcctgcaaga tggccgaatc ttcattggca cctttaaggc ttttgacaag 541 catatgaatt tgatcctctg tgattgtgat gagttcagaa agatcaagcc aaagaatgcg 601 aagcaaccag agcgtgaaga aaagcgggtt ttgggtctgg tgttgctgcg tggggagaac 661 ttggtatcca tgactgtgga ggggccaccc cccaaagata ctggcattgc tcgggtacca 721 cttgctggag ctgctggagg ccctggggtt ggtagggcag ctggtagagg agtaccagct 781 ggtgtgccaa ttccccaggc ccctgctgga ttggcaggcc ctgtccgagg agttggggga 841 ccatcccagc aggtaatgac tccacaggga agaggcactg tagcagctgc tgctgttgct 901 gcgactgcca gtattgctgg agccccaaca cagtacccac caggacgggg cactccgccc 961 ccacccgtcg gcagagcaac cccacctcca ggcattatgg ctcctccacc tggtatgaga 1021 ccacccatgg gcccaccaat tgggcttccc cctgctcgag ggacgccaat aggcatgccg 1081 cctccgggaa tgagaccccc tccaccaggc attagaggtc cacctccccc aggaatgcgt 1141 ccaccaagac cttagcatac tgttgatcca tctcagtcac tttttcccct gcaatgcgtc 1201 ttgtgaaatt gtgtagagtg tttgtgagct ttttgttccc tcattctgca ttaataatag 1261 ctaataataa atgcatagag caattaaaaa aaaaaaaaaa //