LOCUS BC024737 1591 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Yip1 domain family, member 5, mRNA (cDNA clone
MGC:29907 IMAGE:5109854), complete cds.
ACCESSION BC024737
VERSION BC024737.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1591)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1591)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: m Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1591
/db_xref="H-InvDB:HIT000039831"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29907 IMAGE:5109854"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1591
/gene="YIPF5"
/gene_synonym="FinGER5"
/gene_synonym="SB140"
/gene_synonym="SMAP-5"
/gene_synonym="SMAP5"
/gene_synonym="YIP1A"
/db_xref="GeneID:81555"
/db_xref="HGNC:HGNC:24877"
CDS 126..899
/gene="YIPF5"
/gene_synonym="FinGER5"
/gene_synonym="SB140"
/gene_synonym="SMAP-5"
/gene_synonym="SMAP5"
/gene_synonym="YIP1A"
/codon_start=1
/product="Yip1 domain family, member 5"
/protein_id="AAH24737.1"
/db_xref="GeneID:81555"
/db_xref="HGNC:HGNC:24877"
/translation="MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDY
SQQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDH
IWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGC
LGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGW
CSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF"
BASE COUNT 439 a 328 c 372 g 452 t
ORIGIN
1 ctttggccct gtgacacgta gcaacggggc tggttcaggg tctgaaacag agtttggggg
61 ttgtttggga ttagtgaagc tactgccttt gccgccagcg cagcctcaga gtttgattat
121 ttgcaatgtc aggctttgaa aacttaaaca cggatttcta ccagacaagt tacagcatcg
181 atgatcagtc acagcagtcc tatgattatg gaggaagtgg aggaccctat agcaaacagt
241 atgctggcta tgactattcg cagcaaggca gatttgtccc tccagacatg atgcagccac
301 aacagccata caccgggcag atttaccagc caactcaggc atatactcca gcttcacctc
361 agcctttcta tggaaacaac tttgaggatg agccaccttt attagaagag ttaggtatca
421 attttgacca catctggcaa aaaacactaa cagtattaca tccgttaaaa gtagcagatg
481 gcagcatcat gaatgaaact gatttggcag gtccaatggt tttttgcctt gcttttggag
541 ccacattgct actggctggc aaaatccagt ttggctatgt atacgggatc agtgcaattg
601 gatgtctagg aatgttttgt ttattaaact taatgagtat gacaggtgtt tcatttggtt
661 gtgtggcaag tgtccttgga tattgtcttc tgcccatgat cctactttcc agctttgcag
721 tgatattttc tttgcaagga atggtaggaa tcattctcac tgctgggatt attggatggt
781 gtagtttttc tgcttccaaa atatttattt ctgcattagc catggaagga cagcaacttt
841 tagtagcata tccttgcgct ttgttatatg gagtctttgc cctgatttcc gtcttttgaa
901 aatttatctg ggatgtggac atcagtgggc cagatgtaca aaaaggacct tgaactctta
961 aattggacca gcaaactgct gcagcgcaac tctcatgcag atttacattt gactgttgga
1021 gcaatgaaag taaacgtgta tctcttgttc atttttatag aacttttgca tactatattg
1081 gatttacctg cggtgtgact agctttaaat gtttgtgttt atacagataa gaaatgctat
1141 ttctttctgg ttcctgcagc cattgaaaaa cctttttcct tgcaaattat aatgtttttg
1201 atagattttt atcaactgtg ggaaaccaaa cacaaagctg ataacctttc ttaaaaacga
1261 cccagtcaca gtaaagaaga cacaagacgg ccgggcgtgg tagctcacgc ctgtaatccc
1321 agcactttgg gaggccgagg cgggcggatc acaagggcag gagatcgaga ccatcctggt
1381 taacacggtg aaaccccgac tctactaaaa ctacaaaaaa attagctggg cgtggtggcg
1441 ggcgcctgta gtcccagcta ctcaggaggc tgaggcagga gaaaagtgtg aacccaggag
1501 gcggagcttg cagtgagccg agatcacacc actgcactcc atccagcctg ggtgacaggg
1561 tgagactctg tctcaaaaaa aaaaaaaaaa a
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