LOCUS BC024317 5137 bp mRNA linear HUM 18-JAN-2005
DEFINITION Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA
clone IMAGE:3913601), partial cds.
ACCESSION BC024317
VERSION BC024317.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5137)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5137)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: l Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..5137
/db_xref="H-InvDB:HIT000090944"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3913601"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..5137
/gene="CNOT1"
/gene_synonym="AD-005"
/gene_synonym="CDC39"
/gene_synonym="KIAA1007"
/gene_synonym="NOT1"
/gene_synonym="NOT1H"
/db_xref="GeneID:23019"
/db_xref="MIM:604917"
CDS <1..4863
/gene="CNOT1"
/gene_synonym="AD-005"
/gene_synonym="CDC39"
/gene_synonym="KIAA1007"
/gene_synonym="NOT1"
/gene_synonym="NOT1H"
/codon_start=1
/product="CNOT1 protein"
/protein_id="AAH24317.1"
/db_xref="GeneID:23019"
/db_xref="MIM:604917"
/translation="LSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGLPAVN
NDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIYNH
PPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACL
FGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQH
LASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPL
AGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVE
PPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSL
YSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAK
NKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMN
VLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKD
VKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMR
IAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLA
QDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMP
EQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIY
DKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLL
DATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAV
ELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFH
TIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDD
PPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC
TEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKI
NLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTA
FCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLA
PFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILS
AFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTF
LSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDI
FQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQA
QQVMEGTGAS"
BASE COUNT 1472 a 1177 c 1114 g 1374 t
ORIGIN
1 ctttcaaccc ccaatcagac cactgcattc agtggtattg gaggactttc atcacagctt
61 ccagtaggtg gtcttggcac aggcagcctg actggtatag gaactggtgc tcttggactc
121 cctgcagtga ataacgaccc ttttgtacag aggaaactgg gcacctctgg actgaatcag
181 cctacattcc agcagagtaa gatgaaacct tcggacttgt ctcaggtgtg gccagaggca
241 aaccagcact ttagtaaaga gatagatgat gaagcaaaca gctatttcca gcgaatatat
301 aatcatccac cacatccaac catgtctgtt gatgaggtat tagaaatgct gcagagattt
361 aaagactcta ctataaagag ggaacgagaa gtatttaact gtatgctaag gaacttgttt
421 gaagaatatc gtttttttcc ccagtatcct gataaagagt tacatataac agcctgccta
481 tttggtggta taattgagaa aggactggtc acttacatgg cactaggtct ggctctacga
541 tatgttcttg aagccttacg caagcctttt ggatccaaaa tgtattattt cgggattgct
601 gcactagata gatttaaaaa cagattgaag gactatcccc agtattgtca acatttggct
661 tctatcagtc actttatgca atttccacat catttacagg agtatattga gtatggacag
721 cagtctagag atcctcctgt gaaaatgcaa ggctctatca caacccctgg aagtattgca
781 ctggctcagg cccaggctca ggcccaggtt ccagcaaaag ctcctcttgc tggtcaagtt
841 agcactatgg taaccacctc aacaactacc actgttgcta aaacggttac ggtcaccagg
901 ccaactggag tcagctttaa gaaagatgtg ccaccttcta ttaatactac aaatatagat
961 acgttgcttg tggccacaga tcaaactgag agaattgtgg agcccccaga aaatatccag
1021 gagaaaattg cttttatttt caataatctc tcacagtcaa atatgacaca aaaggttgaa
1081 gagctaaagg aaacggtgaa agaagaattt atgccttggg tttcacagta tctggttatg
1141 aagagagtca gtattgagcc aaactttcat agcctgtatt caaacttcct tgacacgctg
1201 aagaatcctg aatttaacaa gatggttctg aatgagacct acagaaacat taaagtgctc
1261 ctgacctctg ataaagctgc agccaatttc tcagatcgtt ctttgctgaa gaacttggga
1321 cattggctag gaatgatcac attagctaaa aacaaaccca tcttacacac tgacttggat
1381 gtgaaatcat tgctgctaga ggcttatgtt aaaggacaac aagaattgct ctatgtagtg
1441 ccctttgttg ccaaagtctt agaatctagc attcgtagtg tggtttttag gccaccaaac
1501 ccttggacaa tggcaattat gaatgtatta gctgagctac atcaggagca tgacttaaag
1561 ttaaacttga agtttgaaat cgaggttctc tgcaagaacc ttgcattaga catcaatgag
1621 ctaaaacctg gaaacctcct aaaggataaa gatcgcctga agaatttaga tgagcaactc
1681 tctgctccaa agaaagatgt caagcagcca gaagaactcc ctcccatcac aaccacaaca
1741 acttctacta caccagctac caacaccact tgtacagcca cggttccacc acagccacag
1801 tacagctacc acgacatcaa tgtctattcc cttgcgggct tggcaccaca cattactctg
1861 aatccaacaa ttcccttgtt tcaggcccat ccacagttga agcagtgtgt gcgtcaggca
1921 attgaacggg ctgtccagga gctggtccat cctgtggtgg atcgatcaat taagattgcc
1981 atgactactt gtgagcaaat agtcaggaag gattttgccc tggattcgga ggaatctcga
2041 atgcgaatag cagctcatca catgatgcgt aacttgacag ctggaatggc tatgattaca
2101 tgcagggaac ctttgctcat gagcatatct accaacttaa aaaacagttt tgcctcagcc
2161 cttcgtactg cttccccaca acaaagagaa atgatggatc aggcagctgc tcaattagct
2221 caggacaatt gtgagttggc ttgctgtttt attcagaaga ctgcagtaga aaaagcaggc
2281 cctgagatgg acaagagatt agcaactgaa tttgagctga gaaaacatgc taggcaagaa
2341 ggacgcagat actgtgatcc tgttgtttta acatatcaag ctgaacggat gccagagcaa
2401 atcaggctga aagttggtgg tgtggaccca aagcagttgg ctgtttatga agagtttgca
2461 cgcaatgttc ctggcttctt acctacaaat gacttaagtc agcccacggg atttttagcc
2521 cagcccatga agcaagcttg ggcaacagat gatgtagctc agatttatga taagtgtatt
2581 acagaactgg agcaacatct acatgccatc ccaccaactt tggccatgaa ccctcaagct
2641 caggctcttc gaagtctctt ggaggttgta gttttatctc gaaactctcg ggatgccata
2701 gctgctcttg gattgctcca aaaggctgta gagggcttac tagatgccac aagtggtgct
2761 gatgctgacc ttctgctgcg ctacagggaa tgccacctct tggtcctaaa agctctgcag
2821 gatggccggg catatgggtc tccatggtgc aacaaacaga tcacaaggtg cctaattgaa
2881 tgtcgagatg aatataaata taatgtggag gctgtggagc tgctaattcg caatcatttg
2941 gttaatatgc agcagtatga tcttcaccta gcgcagtcaa tggagaatgg cttaaactac
3001 atggctgtgg catttgctat gcagttagta aaaatcctgc tggtggatga aaggagtgtt
3061 gctcatgtta ctgaggcaga tctgttccac accattgaaa ccctcatgag gattaatgct
3121 cattccagag gcaatgctcc agaaggattg ccccagctga tggaagtagt gcgatccaac
3181 tatgaagcaa tgattgatcg tgctcatgga ggcccaaact ttatgatgca ttctgggatc
3241 tctcaagcct cagagtatga tgaccctcca ggcctgaggg agaaggcaga gtatcttctg
3301 agggaatggg tgaatctcta ccattcagca gcagctggcc gcgacagtac caaagctttc
3361 tctgcatttg ttggacagat gcaccagcaa ggaatactga agaccgatga tctcataaca
3421 aggttctttc gtctgtgtac tgaaatgtgt gttgaaatca gttaccgtgc tcaggctgag
3481 cagcagcaca atcctgctgc caatcccacc atgatccgag ccaagtgcta tcacaacctg
3541 gatgcctttg ttcgactcat tgcactgctc gtgaaacact caggggaggc caccaacact
3601 gtcacaaaga ttaatctgct gaacaaggtc cttggtatag tagtgggagt tctccttcag
3661 gatcatgatg ttcgtcagag tgaatttcag caacttccct accatcgaat ttttatcatg
3721 cttctcttgg aactcaatgc acctgagcat gtgttggaaa ccattaattt ccagacactt
3781 acagctttct gcaatacatt ccacatcttg aggcctacca aagctcctgg ctttgtatat
3841 gcctggcttg aactgatttc ccatcggata tttattgcaa gaatgctggc acatacgcca
3901 cagcagaagg ggtggcctat gtatgcacag ctactgattg atttattcaa atatttagcg
3961 cctttcctta gaaatgtgga actcaccaaa cctatgcaaa tcctctacaa gggcacttta
4021 agagtgctgc tggttctttt gcatgatttc ccagagttcc tttgtgatta ccattatggg
4081 ttctgtgatg tgatcccacc taattgtatc cagttaagaa atttgatcct gagtgccttt
4141 ccaagaaaca tgaggctccc cgacccattc actcctaatc taaaggtgga catgttgagt
4201 gaaattaaca ttgctccccg gattctcacc aatttcactg gagtaatgcc acctcagttc
4261 aaaaaggatt tggattccta tcttaaaact cgatcaccag tcactttcct gtctgatctg
4321 cgcagcaacc tacaggtatc caatgaacct gggaatcgct acaacctcca gctcatcaat
4381 gcactggtgc tctatgtcgg gactcaggcc attgcgcaca tccacaacaa gggcagcaca
4441 ccttcaatga gcaccatcac tcactcagca cacatggata tcttccagaa tttggctgtg
4501 gacttggaca ctgagggtcg ctatctcttt ttgaatgcaa ttgcaaatca gctccggtac
4561 ccaaatagcc acactcacta cttcagttgc accatgctgt acctttttgc agaggccaat
4621 acggaagcca tccaagaaca gatcacaaga gttctcttgg aacggttgat tgtaaatagg
4681 ccacatcctt ggggtcttct tattaccttc attgagctga ttaaaaaccc agcgtttaag
4741 ttctggaacc atgaatttgt acactgtgcc ccagaaatcg aaaagttatt ccagtcggtc
4801 gcacagtgct gcatgggaca gaagcaggcc cagcaagtaa tggaagggac aggtgccagt
4861 tagacgaaac tgcatctctg ttgtacgtgt cagtctagag gtctcactgc accgagttca
4921 taaactgact gaagaatcct ttcagctctt cctgactttc ccagcccttt ggtttgtggg
4981 tatctgcccc aactactgtt gggatcagcc tcctgtctta tgtgggcacg ttccaaagtt
5041 taaatgcatt tttttgactc ttggccaaaa tttagaagat gctgtgaata tcattttgaa
5101 cttgtgtaaa tacatgaaag agaaaaaaaa aaaaaaa
//