LOCUS BC024287 1421 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens 4-hydroxyphenylpyruvate dioxygenase, mRNA (cDNA clone MGC:39261 IMAGE:5087393), complete cds. ACCESSION BC024287 VERSION BC024287.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1421) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1421) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CGAP (Stanford) cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: m Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38016938. FEATURES Location/Qualifiers source 1..1421 /db_xref="H-InvDB:HIT000039806" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39261 IMAGE:5087393" /tissue_type="Liver, hepatocellular carcinoma" /clone_lib="NIH_MGC_100" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..1421 /gene="HPD" /db_xref="GeneID:3242" /db_xref="HGNC:HGNC:5147" /db_xref="MIM:609695" CDS 23..1204 /gene="HPD" /codon_start=1 /product="4-hydroxyphenylpyruvate dioxygenase" /protein_id="AAH24287.1" /db_xref="GeneID:3242" /db_xref="HGNC:HGNC:5147" /db_xref="MIM:609695" /translation="MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEP LAYRGLETGSREVVSHVIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVED CDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGY EAPAFMDPLLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVH TEYSSLRSIVVANYEESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIIT AIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQ IFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMETNGVVPG M" BASE COUNT 364 a 412 c 387 g 258 t ORIGIN 1 ggaggtttga ctaagatcaa tcatgacgac ttacagtgac aaaggggcaa agcctgagag 61 aggccgattc ctccacttcc actctgtgac cttctgggtt ggcaacgcca agcaggccgc 121 gtcattctac tgcagcaaga tgggctttga acctctagcc tacaggggcc tggagaccgg 181 ttcccgggag gtggtcagcc atgtaatcaa acaagggaag attgtgtttg tcctctcctc 241 agcgctcaac ccctggaaca aagagatggg cgatcacctg gtgaaacacg gtgacggagt 301 gaaggacatt gcgttcgagg tggaagattg tgactacatc gtgcagaaag cacgggaacg 361 gggcgccaaa atcatgcggg agccctgggt agagcaagac aagtttggga aggtgaagtt 421 tgctgtgctg cagacgtatg gggacaccac acacaccctg gtggagaaga tgaactacat 481 cggccaattc ttgcctggat atgaggcccc agcgttcatg gaccccctac ttcctaaact 541 gcccaaatgc agtctggaga tgatcgacca cattgtggga aaccagcctg atcaggagat 601 ggtgtccgcc tccgaatggt acctgaaaaa cctgcagttc caccgcttct ggtccgtgga 661 tgacacgcag gtgcacacgg aatatagctc tctgcgatcc attgtggtgg ccaactatga 721 agagtccatc aagatgccca tcaatgagcc agcgcctggc aagaagaagt cccagatcca 781 ggaatatgtg gactataacg ggggcgctgg ggtccagcac atcgctctca agaccgaaga 841 catcatcaca gcgattcgcc acttgagaga gagaggcctg gagttcttat ctgttccctc 901 cacgtactac aaacaactgc gggagaagct gaagacggcc aagatcaagg tgaaggagaa 961 cattgatgcc ctggaggagc tgaaaatcct ggtggactac gacgagaaag gctacctcct 1021 gcagatcttc accaaaccgg tgcaggaccg gcccacgctc ttcctggaag tcatccagcg 1081 ccacaaccac cagggttttg gagccggcaa cttcaactca ctgttcaagg ctttcgagga 1141 ggagcagaac ctgcggggta acctcaccaa catggagacc aatggggtgg tgcccggcat 1201 gtaagccccg cccaccccac ggaggccaca gccacacagc cacgccccct gattctggaa 1261 ctcgcccaac ttccctactg gctgctcccc ttgggtcccg cccaccagcg gactcggccc 1321 ccaaggctcc gcccacactg accacgcccc tcggcggggc cgccctctgc tccagccctc 1381 ccgattaaag cgtgccccgg tccaaaaaaa aaaaaaaaaa a //