LOCUS BC024269 1177 bp mRNA linear HUM 28-SEP-2004
DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 1,
mRNA (cDNA clone MGC:39133 IMAGE:4852401), complete cds.
ACCESSION BC024269
VERSION BC024269.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1177)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1177)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: g Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18641372.
FEATURES Location/Qualifiers
source 1..1177
/db_xref="H-InvDB:HIT000039798"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39133 IMAGE:4852401"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1177
/gene="HLA-DRB1"
/gene_synonym="HLA-DR1B"
/db_xref="GeneID:3123"
/db_xref="MIM:142857"
CDS 44..844
/gene="HLA-DRB1"
/gene_synonym="HLA-DR1B"
/codon_start=1
/product="HLA-DRB1 protein"
/protein_id="AAH24269.1"
/db_xref="GeneID:3123"
/db_xref="MIM:142857"
/translation="MVCLKFPGGSCMAALTVTLMVLSSPLALAGDTRPRFLEQVKHEC
HFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPSAEYWNSQKDLLEQRRA
AVDTYCRHNYGVVESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRW
FRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWR
ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS"
BASE COUNT 262 a 326 c 323 g 266 t
ORIGIN
1 ctcacctgct cctctggccc ctggtcctgt cctgttctcc agcatggtgt gtctgaagtt
61 ccctggaggc tcctgcatgg cagctctgac agtgacactg atggtgctga gctccccact
121 ggctttggct ggggacaccc gaccacgttt cttggagcag gttaaacatg agtgtcattt
181 cttcaacggg acggagcggg tgcggttcct ggacagatac ttctatcacc aagaggagta
241 cgtgcgcttc gacagcgacg tgggggagta ccgggcggtg acggagctgg ggcggcctag
301 cgccgagtac tggaacagcc agaaggacct cctggagcag aggcgggccg cggtggacac
361 ctactgcaga cacaactacg gggttgtgga gagcttcaca gtgcagcggc gagtctatcc
421 tgaggtgact gtgtatcctg caaagaccca gcccctgcag caccacaacc tcctggtctg
481 ctctgtgaat ggtttctatc caggcagcat tgaagtcagg tggttccgga acggccagga
541 agagaagact ggggtggtgt ccacaggcct gatccagaat ggagactgga ccttccagac
601 cctggtgatg ctggaaacag ttcctcggag tggagaggtt tacacctgcc aagtggagca
661 cccaagcctg acgagccctc tcacagtgga atggagagca cggtctgaat ctgcacagag
721 caagatgctg agtggagtcg ggggcttcgt gctgggcctg ctcttccttg gggccgggct
781 gttcatctac ttcaggaatc agaaaggaca ctctggactt cagccaacag gattcctgag
841 ctgaagtgaa gatgaccaca ttcaaggaag aaccttctgc cccagctttg caggatgaaa
901 cacttccccg cttggctctc attcttccac aagagagacc tttctccgga cctggttgct
961 actggttcag cagctctgca gaaaatgtcc tcccttgtgg ctgcctcagc tcgtaccttt
1021 ggcctgaagt cccagcatta atggcagccc ctcatcttcc aagttttgtg ctccccttta
1081 cctaatgctt cctgcctccc atgcatctgt actcctgctg tgccacaaac acattacatt
1141 attaaatgtt tctcaaacaa aaaaaaaaaa aaaaaaa
//