LOCUS BC024187 3587 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40, mRNA (cDNA
clone MGC:26626 IMAGE:4822080), complete cds.
ACCESSION BC024187
VERSION BC024187.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3587)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3587)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC024187.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: c Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542728.
FEATURES Location/Qualifiers
source 1..3587
/db_xref="H-InvDB:HIT000039757"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26626 IMAGE:4822080"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3587
/gene="DHX40"
/gene_synonym="ARG147"
/gene_synonym="FLJ22060"
/gene_synonym="PAD"
/db_xref="GeneID:79665"
/db_xref="HGNC:HGNC:18018"
/db_xref="MIM:607570"
CDS 63..2402
/gene="DHX40"
/gene_synonym="ARG147"
/gene_synonym="FLJ22060"
/gene_synonym="PAD"
/codon_start=1
/product="DEAH (Asp-Glu-Ala-His) box polypeptide 40"
/protein_id="AAH24187.1"
/db_xref="GeneID:79665"
/db_xref="HGNC:HGNC:18018"
/db_xref="MIM:607570"
/translation="MSRFPAVAGRAPRRQEEGERSRDLQEERLSAVCIADREEKGCTS
QEGGTTPTFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIG
VTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILG
DPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKL
SAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDIL
VFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPP
PPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQ
RSGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFP
YLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKAASLDCE
DLLLPIAAMLSVENVFIRPVDPEYQKEAEQRHRELAAKAGGFNDFATLAVIFEQCKSS
GAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFPKETFEGPKHEVLRRCLC
AGYFKNVARRSVGRTFCTMDGRGSPVHIHPSSALHEQETKLEWIIFHEVLVTTKVYAR
IVCPIRYEWVRDLLPKLHEFNAHDLSSVARREVREDARRRWTNKENVKQLKDGISKDV
LKKMQRRNDDKSISDARARFLERKQQRTQDHSDTRKETG"
BASE COUNT 1106 a 666 c 771 g 1044 t
ORIGIN
1 gtctttcccc tcccatctcc tcagatcggt ggacgtgctc gcctccactc ggggccaggt
61 ctatgtcccg gtttcccgca gtcgcgggca gggcgccaag gcggcaggag gagggtgagc
121 ggtcaagaga cctccaggaa gagcggctct cggctgtttg catcgccgat agagaagaga
181 aaggatgcac gtcccaggag ggaggaacta ctccaacttt tcctattcag aaacaaagaa
241 aaaagattat tcaagctgtg agggacaatt cattccttat tgttactgga aatacaggaa
301 gtggtaaaac aactcaactc ccaaaatatc tatatgaagc agggttttca caacatggta
361 tgattggtgt aactcaacca cgaaaagtag ctgctatatc agttgctcag agagtagctg
421 aagaaatgaa atgcactttg ggatccaaag taggatacca agttcgtttt gatgattgca
481 gttctaagga gacagcaatc aaatatatga ctgatggatg tttactgaaa catattctgg
541 gagacccaaa tcttaccaaa ttcagtgtca ttattttgga tgaagcccat gaaagaactc
601 taactacaga tatcttattt ggtttattga agaagctatt tcaggagaag tctcctaata
661 ggaaggagca tttaaaagtg gtggtaatgt cagcaactat ggaattagcc aagctctctg
721 cattctttgg aaattgtcca atatttgata tacctggaag gctttatcca gtcagagaga
781 aattctgcaa tttgattggt ccacgagaca gagaaaatac tgcgtatatt caagcgattg
841 tgaaagtcac catggatatc catttgaatg aaatggctgg agacatcttg gtttttctga
901 ctggccagtt tgaaatagaa aaaagttgtg agttactttt tcagatggca gagtctgttg
961 attatgatta tgatgttcaa gataccaccc tcgatggctt gttaatattg ccgtgttatg
1021 gatcaatgac aacagatcaa cagaggagga tatttttgcc accaccacct ggaattagaa
1081 aatgtgtcat atccaccaat atttctgcaa cgtctttgac aatagatgga atcagatatg
1141 tggtagatgg tggcttcgtg aagcagttaa atcacaaccc cagattaggg ttggacatcc
1201 tggaggtggt tccaatttca aagagcgagg cattacagcg aagtggccga gctggcagga
1261 cttcttcagg aaaatgcttt cggatctata gtaaagattt ttggaaccag tgtatgcctg
1321 accatgtgat ccctgaaatt aagagaacta gtttgacatc tgtagttctg accttaaagt
1381 gccttgccat acacgatgtc ataaggtttc cctatttgga tccacctaat gagagactta
1441 ttttagaagc tcttaaacaa ctttaccagt gtgatgctat tgacaggagt ggccatgtca
1501 ccagattggg tttgtctatg gtggagtttc ctttgcctcc acatctgaca tgtgcagtaa
1561 taaaagctgc ttccctggat tgtgaagatc tactacttcc aatagcagca atgttgtctg
1621 tggaaaacgt cttcattaga cctgttgatc cagagtacca gaaggaagca gaacagagac
1681 atcgagaatt ggcagctaaa gctggaggat ttaatgactt tgcaacttta gctgtcatct
1741 ttgaacaatg caaatcaagt ggagctccag cttcatggtg ccaaaaacac tggattcatt
1801 ggaggtgctt attttctgca tttcgtgtgg aagctcaact tcgagaacta atcaggaagc
1861 ttaaacagca aagtgatttc ccaaaagaga cctttgaagg ccctaaacat gaagtactac
1921 gaagatgtct ttgtgcgggc tatttcaaaa atgtagctcg aagatctgtt gggagaacgt
1981 tttgcacaat ggatggtcgt ggaagcccag ttcacattca tccttcctca gcacttcatg
2041 aacaggaaac caaacttgaa tggatcattt ttcatgaggt attggttacc accaaagtct
2101 acgcaagaat tgtatgccca atccgttatg aatgggtaag agacttgtta cccaagttgc
2161 atgaatttaa tgcacatgat ttgagcagtg tggcccgacg tgaagtgaga gaagatgcaa
2221 gaaggagatg gacaaataag gaaaatgtaa agcagctaaa ggatggaata tcgaaagacg
2281 tcttaaagaa aatgcaaaga agaaatgatg acaaatccat atctgatgca cgggctcgtt
2341 tccttgagag aaagcagcag aggacccagg accacagtga cacacgaaag gaaacaggct
2401 aaggtggtga accctccaat tcaggaagtg ggaaaaggag ccaggaaatg tgcttctact
2461 ttgccagtta tttcagacag cactaccaag aggaggtggt cagcacttgt tattggccta
2521 tgaactaaaa gcaaatcaaa gctcataaat caaagctcat cagttcccat aaatgcagtt
2581 gtcaaagaaa agatttggtt gccatagtca taagcaatga tacatgaaac caatgaaaga
2641 cagtacatgt aataatattt tcctcagtac aattttgctg gccttaactg gtatcaaacg
2701 ctgtcattga gatgttttca aagaacattg agttgtattt aatcagcgtg tactccattt
2761 gcattgaagc attaaaaatt atttttctta aaatctcttt aaggccttct tgttgctgtt
2821 agaatagtgc tatatatcag gtatgtgacc atttatttca gaaggctgaa cataagaggt
2881 ttctactcag caatacttag atgtctaact gtttaattgc tacagagctt tatagatatt
2941 tagagaaaag acttaatcaa ttagtaaata aaattgccta tggcaggatt ctttcttgaa
3001 ttaatattaa tccttaaatt gatttttctg ggattataca aattcctttt tatataaaag
3061 tatattgttt aaaacagtag ctatagccat taaccaaagg acagatgata tatatatata
3121 tgatatatat gtatatataa gttctttttt agctgtacct acgtacttat atcagcacca
3181 tgtatgtagg tgtgatagta ctttcaaaca gcgcctccac ctggcctact ctgttatttc
3241 cacctgtttg ggtagggcca tttaacttcc attatgccaa acttgggatg ggattttcga
3301 agcagacaac actatttcat cgtgtttcaa attggaacct tgaggctagt tagtatcaca
3361 ctcaggccac actcagcact tgcccactct tgtttactgc cttgtattct agttatttgt
3421 gtatttgtct ccctcactag attatacgct ccttgtgggc agggactgtg tcttttttca
3481 tctttgtatc tttcatgcac ctagcatagt gctttgcaca tagtagtcac tcagtgtttg
3541 ttaaataaag ctattagtgt cattaaaatt caaaaaaaaa aaaaaaa
//