LOCUS BC024181 2148 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens estrogen receptor 2 (ER beta), mRNA (cDNA clone
MGC:26496 IMAGE:4825937), complete cds.
ACCESSION BC024181
VERSION BC024181.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2148)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2148)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC024181.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: m Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10835012
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2148
/db_xref="H-InvDB:HIT000039751"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26496 IMAGE:4825937"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2148
/gene="ESR2"
/gene_synonym="ER-BETA"
/gene_synonym="Erb"
/gene_synonym="ESR-BETA"
/gene_synonym="ESRB"
/gene_synonym="ESTRB"
/gene_synonym="NR3A2"
/db_xref="GeneID:2100"
/db_xref="HGNC:HGNC:3468"
/db_xref="MIM:601663"
CDS 286..1257
/gene="ESR2"
/gene_synonym="ER-BETA"
/gene_synonym="Erb"
/gene_synonym="ESR-BETA"
/gene_synonym="ESRB"
/gene_synonym="ESTRB"
/gene_synonym="NR3A2"
/codon_start=1
/product="ESR2 protein"
/protein_id="AAH24181.1"
/db_xref="GeneID:2100"
/db_xref="HGNC:HGNC:3468"
/db_xref="MIM:601663"
/translation="MDIKNSPSSLNSPSSYNCSQSILPLEHGSIYIPSSYVDSHHEYP
AMTFYSPAVMNYSIPSNVTNLEGGPGRQTTSPNVLWPTPGHLSPLVVHRQLSHLYAEP
QKSPWCEARSLEHTLPVNRETLKRKVSGNRCASPVTGPGSKRDAHFCAVCSDYASGYH
YGVWSCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKSCQACRLRKCYEVGMVKCG
SRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLDALSPEQLVLTLLEAE
PPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGMRGNA"
BASE COUNT 562 a 527 c 546 g 513 t
ORIGIN
1 aggggacgct ccctcctcgt aggcgtccac actggagaag gaataagatg ggcgattgcc
61 tgggaagcct gacagggcgg cggcagctgg gatgctggag aggactggcc ccttgagtta
121 ctgagtccga tgaatgtgct tgctctgctg gaggaaccgc gctcaggtta cagtcatccc
181 aatatggttc tgaagccatt atacttgccc acgaatcttt gagaacatta taatgacctt
241 tgtgcctctt cttgcaaggt gttttctcag ctgttatctc aagacatgga tataaaaaac
301 tcaccatcta gccttaattc tccttcctcc tacaactgca gtcaatccat cttacccctg
361 gagcacggct ccatatacat accttcctcc tatgtagaca gccaccatga atatccagcc
421 atgacattct atagccctgc tgtgatgaat tacagcattc ccagcaatgt cactaacttg
481 gaaggtgggc ctggtcggca gaccacaagc ccaaatgtgt tgtggccaac acctgggcac
541 ctttctcctt tagtggtcca tcgccagtta tcacatctgt atgcggaacc tcaaaagagt
601 ccctggtgtg aagcaagatc gctagaacac accttacctg taaacagaga gacactgaaa
661 aggaaggtta gtgggaaccg ttgcgccagc cctgttactg gtccaggttc aaagagggat
721 gctcacttct gcgctgtctg cagcgattac gcatcgggat atcactatgg agtctggtcg
781 tgtgaaggat gtaaggcctt ttttaaaaga agcattcaag gacataatga ttatatttgt
841 ccagctacaa atcagtgtac aatcgataaa aaccggcgca agagctgcca ggcctgccga
901 cttcggaagt gttacgaagt gggaatggtg aagtgtggct cccggagaga gagatgtggg
961 taccgccttg tgcggagaca gagaagtgcc gacgagcagc tgcactgtgc cggcaaggcc
1021 aagagaagtg gcggccacgc gccccgagtg cgggagctgc tgctggacgc cctgagcccc
1081 gagcagctag tgctcaccct cctggaggct gagccgcccc atgtgctgat cagccgcccc
1141 agtgcgccct tcaccgaggc ctccatgatg atgtccctga ccaagttggc cgacaaggag
1201 ttggtacaca tgatcagctg ggccaagaag attcccggga tgaggggaaa tgcgtagaag
1261 gaattctgga aatctttgac atgctcctgg caactacttc aaggtttcga gagttaaaac
1321 tccaacacaa agaatatctc tgtgtcaagg ccatgatcct gctcaattcc agtatgtacc
1381 ctctggtcac agcgacccag gatgctgaca gcagccggaa gctggctcac ttgctgaacg
1441 ccgtgaccga tgctttggtt tgggtgattg ccaagagcgg catctcctcc cagcagcaat
1501 ccatgcgcct ggctaacctc ctgatgctcc tgtcccacgt caggcatgcg agggcagaaa
1561 aggcctctca aacactcacc tcatttggaa tgaagatgga gactcttttg cctgaagcaa
1621 cgatggagca gtgaccctct aatcaactcg gtggcctaaa gaaaaatctt gggtaacatt
1681 ttcacttcag tttccctctg ggatcattgt aatccatgaa aaaaataatt ttaaagaaag
1741 agttaaaata ctttgaagtt agttatgtgg ttaaaaacca ccttcctttc tattatcaat
1801 ccaacaattt gataactgta agcgctaaag tgaagacgga ttctcttcag atggtctcct
1861 taactgccca gggcttgcag atgtctcacc catgaggggc accaatgtag aaagctgagg
1921 cttcatctac tgatgagctt cactggtttc ccctgaggtt tgtgctttgg cagagaaggg
1981 gaggagggga ctgggattgt gtggtcagct gtgcctgcca acagatgcag gttaggaact
2041 gtgttcagta tcttccaata agaaagggga aatgccgatg cctatcctct ttgtttaggt
2101 agaaagtaaa atgctactgg acttaaatgg gcaaaaaaaa aaaaaaaa
//