LOCUS BC024009 2394 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 50, mRNA (cDNA clone
MGC:26709 IMAGE:4822973), complete cds.
ACCESSION BC024009
VERSION BC024009.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2394)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2394)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC024009.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: e Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255219.
FEATURES Location/Qualifiers
source 1..2394
/db_xref="H-InvDB:HIT000050872"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26709 IMAGE:4822973"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2394
/gene="LRRC50"
/gene_synonym="FLJ25330"
/db_xref="GeneID:123872"
/db_xref="HGNC:HGNC:30539"
CDS 125..2302
/gene="LRRC50"
/gene_synonym="FLJ25330"
/codon_start=1
/product="leucine rich repeat containing 50"
/protein_id="AAH24009.3"
/db_xref="GeneID:123872"
/db_xref="HGNC:HGNC:30539"
/translation="MHPEPSEPATGGAAELDCAQEPGVEESAGDHGSAGRGGCKEEIN
DPKEICVGSSDTSYHSQQKQSGDNGSGGHFAHPREDREDRGPRMTKSSLQKLCKQHKL
YITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENLEAQTELRCLFLQM
NLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHLETVEDIQHLQE
CLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRTVTVRLKHLT
YLDDRPVFPKDRACAEAWARGGYAAEKEERQQWESRERKKITDSIEALAMIKQRAEER
KRQRESQERGEMTSSDDGENVPASAEGKEEPPGDRETRQKMELFVKESFEAKDELCPE
RPSGEEPPVEAKREDGGPEPEGTLPAETLLLSSPVEVKGEDGDGEPEGTLPAEAPPPP
PPVEVKGEDGDQEPEGTLPAETLLLSPPVKVKGEDGDREPEGTLPAEAPPPLPLGAAR
EEPTPQAVATEGVFVTELDGTRTEDLETIRLETKETCCIDDLPDLEDDDETGKSLEDQ
NMCFPKIEVISSLSDDSDPELDYTSLPVLENLPTDTLSNIFAVSKDTSKAARVPFTDI
FKKEAKRDSEIRKQDTKSPRPLIQELSDEDPSGQPLMPPTCQRDAAPLTSTGDRDSDF
LAASSPVPTESAATPPETCVGVAQPSQALPTWDLTAFPAPKAS"
BASE COUNT 680 a 602 c 680 g 432 t
ORIGIN
1 agggggccag cggctggcga agaaggaaag agggtactct ctggctgggc tggggccgta
61 gcgacgtccg ccgcgaacct gggcccccca aagctgcggg gcgttcggtg tcgccgaagt
121 aaacatgcac cctgagccct cggagcctgc gacaggtggt gcagcagagc tggattgcgc
181 gcaggagccc ggcgtggagg agtctgcggg tgaccacggg agcgcaggcc gagggggctg
241 caaggaagaa attaatgatc ctaaggaaat atgtgtgggt tcttctgaca catcctacca
301 cagccagcag aaacagagtg gtgataatgg gtcaggtggt cacttcgcac acccaagaga
361 agacagggaa gatcggggcc ccagaatgac taaaagttcc ctgcaaaaac tctgcaagca
421 gcacaagctt tatattaccc cagcattgaa tgatacgctg tatttacact ttaaaggttt
481 tgatcgcatt gagaacctgg aagagtacac agggctgcgc tgtctctggc tgcagagcaa
541 tggaatacag aaaatcgaaa acctggaggc ccaaactgag ttgcgttgcc tcttcttgca
601 aatgaacttg ctccgtaaaa ttgagaacct ggaacctctg cagaaactgg atgctcttaa
661 cctcagcaac aattacatca agaccattga aaacctctcc tgcctcccag tcctgaacac
721 attgcagatg gcccacaatc acctggagac cgtggaggac attcagcatc tacaagagtg
781 tttgaggctt tgtgtccttg acctttcgca caacaagctg agtgacccgg agatcctgag
841 cattctggaa agcatgcccg atttgcgtgt actgaatttg atgggaaacc cggttatcag
901 acagattcct aattacagaa ggacagtcac tgtacgacta aagcacttaa catacctgga
961 tgatagacca gtgtttccaa aggacagagc ttgtgcggag gcctgggcta ggggagggta
1021 cgcagctgaa aaggaggaga gacagcagtg ggagagcagg gagcggaaga agatcacaga
1081 cagcattgaa gccttggcca tgatcaagca gcgggcagag gagaggaaaa gacagagaga
1141 gagtcaagag agaggggaga tgacatcttc agatgatggt gagaatgtgc ccgccagtgc
1201 ggaaggcaag gaggagcctc ccggggacag agaaacaagg cagaagatgg agctatttgt
1261 taaggaaagc tttgaggcca aggacgagct ctgcccggaa aggccaagtg gagaggagcc
1321 gcctgtggag gctaaaagag aggatggagg tccagagcca gaggggaccc tcccagctga
1381 gaccctgcta ctgtcgtcac ctgtggaggt taaaggagag gacggagatg gagagccaga
1441 ggggaccctc ccagctgagg ccccaccacc cccgccacct gtggaggtta aaggagagga
1501 tggagatcaa gagccagagg ggaccctccc agctgagacc ctgctactgt caccgcctgt
1561 gaaggttaaa ggagaggatg gagatcgaga gccagagggg accctcccag ctgaggcccc
1621 accaccactg cccctgggag ctgccaggga agaaccgact ccccaggctg tggccactga
1681 gggtgtattc gttacagaac ttgatggaac gagaacggaa gatttagaaa ccattagact
1741 ggagacaaag gagacatgct gcattgatga cctacctgac ttggaagatg atgatgaaac
1801 aggcaaatct ctggaagacc agaatatgtg ctttccgaag attgaggtca tctcgagctt
1861 gagtgatgac agtgaccctg aactggacta cacgtcactc cctgtgctgg aaaacctgcc
1921 cacagacact ctgtcaaata tatttgcagt ctctaaagac acctcaaagg cggctcgggt
1981 gcccttcaca gacatcttta aaaaagaagc taagagggac tcggaaatcc gaaaacaaga
2041 caccaagtcc ccaagacccc tgatccagga gctcagcgac gaggacccct ctggccagcc
2101 actgatgccc cccacctgcc aaagagatgc tgcaccactc acttccactg gagacaggga
2161 cagcgacttc cttgcagcct cttctccggt gccgactgag agcgccgcca cacccccaga
2221 gacgtgtgtc ggagttgccc agcccagcca agctctgccc acgtgggacc tcactgcatt
2281 cccagcaccg aaagcatcat agttttcccc agttatatgt agcataaatg gtttaattat
2341 aaatgtctcc cttaggcatg ataaacattt taacacccaa aaaaaaaaaa aaaa
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