LOCUS BC023542 2679 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sortilin 1, mRNA (cDNA clone MGC:15104 IMAGE:4123836),
complete cds.
ACCESSION BC023542
VERSION BC023542.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2679)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2679)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: e Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52352810.
FEATURES Location/Qualifiers
source 1..2679
/db_xref="H-InvDB:HIT000050816"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15104 IMAGE:4123836"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2679
/gene="SORT1"
/gene_synonym="Gp95"
/gene_synonym="NT3"
/db_xref="GeneID:6272"
/db_xref="HGNC:HGNC:11186"
/db_xref="MIM:602458"
CDS 50..2545
/gene="SORT1"
/gene_synonym="Gp95"
/gene_synonym="NT3"
/codon_start=1
/product="sortilin 1"
/protein_id="AAH23542.1"
/db_xref="GeneID:6272"
/db_xref="HGNC:HGNC:11186"
/db_xref="MIM:602458"
/translation="MERPWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPA
APLPRWSGPIGVSWGLRAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQ
HVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDL
INNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLT
QMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGS
CKADLGALELWRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQG
DTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDR
HLYTTTGGETDFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDA
TAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVYIS
DDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDP
IYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHS
TDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRP
ENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGGVNPVREVKDLKKKC
TSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQH
AEANGVDGVDALDTASHTNKSGYHDDSDEDLLE"
BASE COUNT 694 a 648 c 707 g 630 t
ORIGIN
1 ggcgggcgcg ccgggcggca ggtgtcggcg tcggcggcat tcggcggcga tggagcggcc
61 ctggggagct gcggacggcc tctcgcgctg gccccatggc ctcggcctcc tcctcctcct
121 gcagctgctg ccgccgtcga ccctcagcca ggaccggctg gacgcgccgc cgccgcccgc
181 tgcgccgctg ccgcgctggt ctggccccat cggggtgagc tgggggctgc gggcggccgc
241 agccgggggc gcgtttcccc gcggcggccg ttggcgtcgc agcgcgccgg gcgaggacga
301 ggagtgcggc cgggtccggg acttcgtcgc caagctggcc aacaacacgc accagcatgt
361 gtttgatgat ctcagaggct cagtatcctt gtcctgggtt ggagatagca ctggggtcat
421 tctagtcttg actaccttcc atgtaccact ggtaattatg acttttggac agtccaagct
481 atatcgaagt gaggattatg ggaagaactt taaggatatt acagatctca tcaataacac
541 ctttattcgg actgaatttg gcatggctat tggtcctgag aactctggaa aggtggtgtt
601 aacagcagag gtgtctggag gaagtcgtgg aggaagaatc ttcagatcat cagattttgc
661 gaagaatttt gtgcaaacag atctcccttt tcatcctctc actcagatga tgtatagccc
721 tcagaattct gattatcttt tagctctcag cactgaaaat ggcctgtggg tgtccaagaa
781 ttttggggga aaatgggaag aaatccacaa agcagtatgt ttggccaaat ggggatcaga
841 caacaccatc ttctttacaa cctatgcaaa tggctcctgc aaagctgacc ttggggctct
901 ggaattatgg agaacttcag acttgggaaa aagcttcaaa actattggtg tgaaaatcta
961 ctcatttggt cttgggggac gtttcctttt tgcctctgtg atggctgata aggataccac
1021 aagaaggatc cacgtttcaa cagatcaagg ggacacatgg agcatggccc agctcccctc
1081 cgtgggacag gaacagttct attctattct ggcagcaaat gatgacatgg tattcatgca
1141 tgtagatgaa cctggagaca ctgggtttgg cacaatcttt acctcagatg atcgaggcat
1201 tgtctattcc aagtctttgg accgacatct ctacactacc acaggcggag agacggactt
1261 taccaacgtg acctccctcc gcggcgtcta cataacaagc gtgctctccg aagataattc
1321 tatccagacc atgatcactt ttgaccaagg aggaaggtgg acgcacctga ggaagcctga
1381 aaacagtgaa tgtgatgcta cagcaaaaaa caagaatgag tgcagccttc atattcatgc
1441 ttcctacagc atctcccaga aactgaatgt tccaatggcc ccactctcag agccgaatgc
1501 cgtaggcatt gtcattgctc atggtagcgt gggggatgcc atctcagtga tggttccaga
1561 tgtgtacatc tcagatgatg ggggttactc ctggacaaag atgctggaag gaccccacta
1621 ttacaccatc ctggattctg gaggcatcat tgtggccatt gagcacagca gccgtcctat
1681 caatgtgatt aagttctcca cagacgaagg tcaatgctgg caaacctaca cgttcaccag
1741 ggaccccatc tatttcactg gcctagcttc agaacctgga gctaggtcca tgaatatcag
1801 catttggggc ttcacagaat ctttcctgac cagccagtgg gtctcctaca ccattgattt
1861 taaagatatc cttgaaagga actgtgaaga gaaggactat accatatggc tggcacactc
1921 cacagaccct gaagattatg aagatggctg cattttgggc tacaaagaac agtttctgcg
1981 gctacgcaag tcatccgtgt gtcagaatgg tcgagactat gttgtgacca agcagccctc
2041 catctgcctc tgttccctgg aggactttct ctgtgatttt ggctactacc gtccagaaaa
2101 tgactccaag tgtgtggaac agccagaact gaagggccac gacctggagt tttgtctgta
2161 cggaagagaa gaacacctaa caacaaatgg gtaccggaaa attccagggg acaaatgcca
2221 gggtggggta aatccagttc gagaagtaaa agacttgaaa aagaaatgca caagcaactt
2281 tttgagtccg gaaaaacaga attccaagtc aaattctgtt ccaattatcc tggccatcgt
2341 gggattgatg ctggtcacag tcgtagcagg agtgctcatt gtgaagaaat atgtctgtgg
2401 gggaaggttc ctggtgcatc gatactctgt gctgcagcag catgcagagg ccaatggtgt
2461 ggatggtgtg gatgctttgg acacagcctc ccacactaat aaaagtggtt atcatgatga
2521 ctcagatgag gacctcttgg aatagctctt cagaggagct ggacccagca tggatggtgg
2581 aaccacagta cctcttacac tccctgtggc tccaacttca ggaaataaat ttcccattgc
2641 gagggaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//