LOCUS BC023531 2956 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens chondroitin polymerizing factor, mRNA (cDNA clone MGC:14188 IMAGE:4123041), complete cds. ACCESSION BC023531 VERSION BC023531.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2956) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2956) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 20, 2003 this sequence version replaced BC023531.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 20 Row: d Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 34222219. FEATURES Location/Qualifiers source 1..2956 /db_xref="H-InvDB:HIT000050813" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:14188 IMAGE:4123041" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2956 /gene="CHPF" /gene_synonym="CSS2" /gene_synonym="FLJ22678" /db_xref="GeneID:79586" CDS 179..2506 /gene="CHPF" /gene_synonym="CSS2" /gene_synonym="FLJ22678" /codon_start=1 /product="chondroitin polymerizing factor" /protein_id="AAH23531.1" /db_xref="GeneID:79586" /translation="MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQ PGDSELPPRGNTNAARRPNSVQPGAEREKPGAGEGAGENWEPRVLPYHPAQPGQAAKK AVRTRYISTELGIRQRLLVAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAP PGMAVVTLGEERPIGHLHLALRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSL ASAAHLYLGRPQDFIGGEPTPGRYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPD EWLGRCILDATGVGCTGDHEGVHYSHLELSPGEPVQEGDPHFRSALTAHPVRDPVHMY QLHKAFARAELERTYQEIQELQWEIQNTSHLAVDGDRAAAWPVGIPAPSRPASRFEVL RWDYFTEQHAFSCADGSPRCPLRGADRADVADVLGTALEELNRRYHPALRLQKQQLVN GYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRPLSRVEILPVPYVTEASRL TVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLYEPRQAQRVAHADVFAPV KAHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDF LNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPELGRDTGRFDRQAASEACFYNS DYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARL SEDLYHRCLQSVLEGLGSRTQLAMLLFEQEQGNST" BASE COUNT 470 a 1044 c 942 g 500 t ORIGIN 1 cgaggcgcgg ctccggggat tcggctcggg ccgctggctc tgctctgcgg ggagggagcg 61 ggcccgcccg cggggcccga gccctccgga tccgccccct ccccggtccc gccccctcgg 121 agactcctct ggctgctctg ggggttcgcc ggggccgggg acccgcggtc cgggcgccat 181 gcgggcatcg ctgctgctgt cggtgctgcg gcccgcaggg cccgtggccg tgggcatctc 241 cctgggcttc accctgagcc tgctcagcgt cacctgggtg gaggagccgt gcggcccagg 301 cccgccccaa cctggagact ctgagctgcc gccgcgcggc aacaccaacg cggcgcgccg 361 gcccaactcg gtgcagcccg gagcggagcg cgagaagccc ggggccggcg aaggcgccgg 421 ggagaattgg gagccgcgcg tcttgcccta ccaccctgca cagcccggcc aggccgccaa 481 aaaggccgtc aggacccgct acatcagcac ggagctgggc atcaggcaga ggctgctggt 541 ggcggtgctg acctctcaga ccacgctgcc cacgctgggc gtggccgtga accgcacgct 601 ggggcaccgg ctggagcgtg tggtgttcct gacgggcgca cggggccgcc gggccccacc 661 tggcatggca gtggtgacgc tgggcgagga gcgacccatt ggacacctgc acctggcgct 721 gcgccacctg ctggagcagc acggcgacga ctttgactgg ttcttcctgg tgcctgacac 781 cacctacacc gaggcgcacg gcctggcacg cctaactggc cacctcagtc tggcctccgc 841 cgcccacctg tacctgggcc ggccccagga cttcatcggc ggagagccca cccccggccg 901 ctactgccac ggaggctttg gggtgctgct gtcgcgcatg ctgctgcaac aactgcgccc 961 ccacctggaa ggctgccgca acgacatcgt cagtgcgcgc cctgacgagt ggctgggtcg 1021 ctgcattctc gatgccaccg gggtgggctg cactggtgac cacgaggggg tgcactatag 1081 ccatctggag ctgagccctg gggagccagt gcaggagggg gaccctcatt tccgaagtgc 1141 cctgacagcc caccctgtgc gtgaccctgt gcacatgtac cagctgcaca aagctttcgc 1201 ccgagctgaa ctggaacgca cgtaccagga gatccaggag ttacagtggg agatccagaa 1261 taccagccat ctggccgttg atggggaccg ggcagctgct tggcccgtgg gtattccagc 1321 accatcccgc ccggcctccc gctttgaggt gctgcgctgg gactacttca cggagcagca 1381 cgctttctcc tgcgccgatg gctcaccccg ctgcccactg cgtggggctg accgggctga 1441 tgtggccgat gttctgggga cagctctaga ggagctgaac cgccgctacc acccggcctt 1501 gcggctccag aagcagcagc tggtgaatgg ctaccgacgc tttgatccgg cccggggtat 1561 ggaatacacg ctggacttgc agctggaggc actgaccccc cagggaggcc gccggcccct 1621 cactcgccga gtgcagctgc tccggccgct gagccgcgtg gagatcttgc ctgtgcccta 1681 tgtcactgag gcctcacgtc tcactgtgct gctgcctcta gctgcggctg agcgtgacct 1741 ggcccctggc ttcttggagg cctttgccac tgcagcactg gagcctggtg atgctgcggc 1801 agccctgacc ctgctgctac tgtatgagcc gcgccaggcc cagcgcgtgg cccatgcaga 1861 tgtcttcgca cctgtcaagg cccacgtggc agagctggag cggcgtttcc ccggtgcccg 1921 ggtgccatgg ctcagtgtgc agacagccgc accctcacca ctgcgcctca tggatctact 1981 ctccaagaag cacccgctgg acacactgtt cctgctggcc gggccagaca cggtgctcac 2041 gcctgacttc ctgaaccgct gccgcatgca tgccatctcc ggctggcagg ccttctttcc 2101 catgcatttc caagccttcc acccagctgt ggccccacca caagggcctg ggcccccaga 2161 gctgggccgt gacactggcc gctttgatcg ccaggcagcc agcgaggcct gcttctacaa 2221 ctccgactac gtggcagccc gtgggcgcct ggcggcagcc tcagaacaag aagaggagct 2281 gctggagagc ctggatgtgt acgagctgtt cctccacttc tccagtctgc atgtgctgcg 2341 ggcggtggag ccggcgctgc tgcagcgcta ccgggcccag acgtgcagcg cgaggctcag 2401 tgaggacctg taccaccgct gcctccagag cgtgcttgag ggcctcggct cccgaaccca 2461 gctggccatg ctactctttg aacaggagca gggcaacagc acctgacccc accctgtccc 2521 cgtgggccgt ggcatggcca caccccaccc cacttctccc ccaaaaccag agccacctgc 2581 cagcctcgct gggcagggct ggccgtagcc agaccccaag ctggcccact ggtcccctct 2641 ctggctctgt gggtccctgg gctctggaca agcactgggg gacgtgcccc cagagccacc 2701 cacttctcat cccaaaccca gtttccctgc cccctgacgc tgctgattcg ggctgtggcc 2761 tccacgtatt tatgcagtac agtctgcctg acgccagccc tgcctctggg ccctgggggc 2821 tgggctgtag aagagttgtt ggggaaggag ggagctgagg agggggcatc tcccaacttc 2881 tcccttttgg accctgccga agctccctgc ctttaataaa ctggccaagt gtgaaaaaaa 2941 aaaaaaaaaa aaaaaa //