LOCUS BC023505 1853 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens extracellular matrix protein 1, mRNA (cDNA clone
MGC:3614 IMAGE:3614195), complete cds.
ACCESSION BC023505
VERSION BC023505.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1853)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1853)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC023505.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12707564.
FEATURES Location/Qualifiers
source 1..1853
/db_xref="H-InvDB:HIT000050798"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3614 IMAGE:3614195"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1853
/gene="ECM1"
/db_xref="GeneID:1893"
/db_xref="HGNC:HGNC:3153"
/db_xref="MIM:602201"
CDS 126..1748
/gene="ECM1"
/codon_start=1
/product="extracellular matrix protein 1"
/protein_id="AAH23505.1"
/db_xref="GeneID:1893"
/db_xref="HGNC:HGNC:3153"
/db_xref="MIM:602201"
/translation="MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYA
APPSPPLSRSLPMDHPDSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEV
GPPLPQEAVPLQKELPSLQHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGW
GHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYS
RCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQ
PHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRE
LLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTR
DECFARRAPYPNYDRDILTIDISRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCC
DLPFPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVA
LVSGDTENAKGQGEQGSTGGTNISSTSEPKEE"
BASE COUNT 433 a 609 c 459 g 352 t
ORIGIN
1 agaagagctg gtcctgaagc tcacaaccgt aacagccacc agacaagctt cagtggccgg
61 cccttcacat ccagacttgc ctgagaggac ccacctctga gtgtccagtg gtcagttgcc
121 ccaggatggg gaccacagcc agagcagcct tggtcttgac ctatttggct gttgcttctg
181 ctgcctctga gggaggcttc acggctacag gacagaggca gctgaggcca gagcactttc
241 aagaagttgg ctacgcagct cccccctccc cacccctatc ccgaagcctc cccatggatc
301 accctgactc ctctcagcat ggccctccct ttgagggaca gagtcaagtg cagccccctc
361 cctctcagga ggccacccct ctccaacagg aaaagctgct acctgcccaa ctccctgctg
421 aaaaggaagt gggtccccct ctccctcagg aagctgtccc cctccaaaaa gagctgccct
481 ctctccagca ccccaatgaa cagaaggaag gaatgccagc tccatttggg gaccagagcc
541 atccagaacc tgagtcctgg aatgcagccc agcactgcca acaggaccgg tcccaagggg
601 gctggggcca ccggctggat ggcttccccc ctgggcggcc ttctccagac aatctgaacc
661 aaatctgcct tcctaaccgt cagcatgtgg tatatggtcc ctggaaccta ccacagtcca
721 gctactccca cctcactcgc cagggtgaga ccctcaattt cctggagatt ggatattccc
781 gctgctgcca ctgccgcagc cacacaaacc gcctagagtg tgccaaactt gtgtgggagg
841 aagcaatgag ccgattctgt gaggccgagt tctcggtcaa gacccgaccc cactggtgct
901 gcacgcggca gggggaggct cggttctcct gcttccagga ggaagctccc cagccacact
961 accagctccg ggcctgcccc agccatcagc ctgatatttc ctcgggtctt gagctgcctt
1021 tccctcctgg ggtgcccaca ttggacaata tcaagaacat ctgccacctg aggcgcttcc
1081 gctctgtgcc acgcaacctg ccagctactg accccctaca aagggagctg ctggcactga
1141 tccagctgga gagggagttc cagcgctgct gccgccaggg gaacaatcac acctgtacat
1201 ggaaggcctg ggaggatacc cttgacaaat actgtgaccg ggagtatgct gtgaagaccc
1261 accaccactt gtgttgccgc caccctccca gccctactcg ggatgagtgc tttgcccgtc
1321 gggctcctta ccccaactat gaccgggaca tcttgaccat tgacatcagt cgagtcaccc
1381 ccaacctcat gggccacctc tgtggaaacc aaagagttct caccaagcat aaacatattc
1441 ctgggctgat ccacaacatg actgcccgct gctgtgacct gccatttcca gaacaggcct
1501 gctgtgcaga ggaggagaaa ttaaccttca tcaatgatct gtgtggtccc cgacgtaaca
1561 tctggcgaga ccctgccctc tgctgttacc tgagtcctgg ggatgaacag gtcaactgct
1621 tcaacatcaa ttatctgagg aacgtggctc tagtgtctgg agacactgag aacgccaagg
1681 gccaggggga gcagggctca actggaggaa caaatatcag ctccacctct gagcccaagg
1741 aagaatgagt caccccagag ccctagaggg tcagatgggg ggaaccccac cctgccccac
1801 ccatctgaac actcattaca ctaaacacct cttggaaaaa aaaaaaaaaa aaa
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