LOCUS BC023144 3617 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5, mRNA (cDNA clone MGC:17104 IMAGE:4340921), complete cds. ACCESSION BC023144 VERSION BC023144.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3617) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3617) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: i Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21071057. FEATURES Location/Qualifiers source 1..3617 /db_xref="H-InvDB:HIT000039699" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17104 IMAGE:4340921" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3617 /gene="SMARCA5" /gene_synonym="hISWI" /gene_synonym="hSNF2H" /gene_synonym="ISWI" /gene_synonym="SNF2H" /gene_synonym="WCRF135" /db_xref="GeneID:8467" /db_xref="HGNC:HGNC:11101" /db_xref="MIM:603375" CDS 214..3372 /gene="SMARCA5" /gene_synonym="hISWI" /gene_synonym="hSNF2H" /gene_synonym="ISWI" /gene_synonym="SNF2H" /gene_synonym="WCRF135" /codon_start=1 /product="SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5" /protein_id="AAH23144.1" /db_xref="GeneID:8467" /db_xref="HGNC:HGNC:11101" /db_xref="MIM:603375" /translation="MSSAAEPPPPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQA VASAASAGPADAEMEEIFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELF AHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSK ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISL LGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLL PGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLL LTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFL LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNIL MQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQM TRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMK LRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDIDGILERGA KKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKA NYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGY KVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKA NEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRR ISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDE LRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKP STQKRKMDGAPDGRGRKKKLKL" BASE COUNT 1211 a 678 c 834 g 894 t ORIGIN 1 cctagagccc cgcggaagag cagaacgttt gggagtgtgc agctcctggg cccggctcag 61 gcccgtcgcg gaggcgcggc gcaggggagc gctcgggtgg gagtctcgct cctccaccag 121 tttattgcga cgtagcatcc aggcctaggc ctccccgtcc atccccgccg gactcgggcc 181 tctggcagca gcgggtgacg cagacggaac atcatgtcgt ccgcggccga gcctccgcca 241 cccccgcctc ccgagagcgc gccttccaag cccgcagcct cgatcgccag cggcgggagc 301 aacagcagca acaaaggcgg ccccgaaggc gtcgcggcgc aggcggttgc gtctgcggcc 361 agcgctggtc ccgcagacgc cgagatggag gaaatatttg atgatgcgtc acctggaaag 421 caaaaggaaa tccaagaacc agatcctacc tatgaagaaa aaatgcaaac tgaccgggca 481 aatagattcg agtatttatt aaagcagaca gaactttttg cacatttcat tcaacctgct 541 gctcagaaga ctccaacttc acctttgaag atgaaaccag ggcgcccacg aataaaaaaa 601 gatgagaagc agaacttact atccgttggc gattaccgac accgtagaac agagcaagag 661 gaggatgaag agctattaac agaaagctcc aaagcaacca atgtttgcac tcgatttgaa 721 gactctccat cgtatgtaaa atggggtaaa ctgagagatt atcaggtccg aggattaaac 781 tggctcattt ctttgtatga gaatggcatc aatggtatcc ttgcagatga aatgggccta 841 ggaaagactc ttcaaacaat ttctcttctt gggtacatga aacattatag aaacattcct 901 gggcctcata tggttttggt tcctaagtct acattacaca actggatgag tgaattcaag 961 agatgggtac caacacttag atctgtttgt ttgataggag ataaagaaca aagagctgct 1021 tttgtcagag acgttttatt accgggagaa tgggatgtat gtgtaacatc ttatgaaatg 1081 cttattaaag agaagtctgt gttcaaaaaa tttaattgga gatacttagt aatagatgaa 1141 gctcacagga tcaaaaatga aaaatctaag ttgtcagaaa tagtgaggga attcaagact 1201 acaaatagac tattattaac tggaacacct cttcagaaca acttgcatga gctgtggtca 1261 cttcttaact ttctgttgcc agatgtgttt aattcagcag atgactttga ttcctggttt 1321 gatacaaaca actgccttgg ggatcaaaaa ctagttgaga ggcttcatat ggttttgcgt 1381 ccattcctcc ttcgtcgaat taaggctgat gttgaaaaga gtttgcctcc aaagaaggaa 1441 gtaaaaatct atgtgggcct cagcaaaatg caaagggaat ggtatactcg gatattaatg 1501 aaggatatag atatactcaa ctcagcaggc aagatggaca aaatgaggtt attgaacatc 1561 ctaatgcagt tgagaaaatg ttgtaatcat ccatatctct ttgatggagc agaacctggt 1621 ccaccttata caacagatat gcatctagta accaacagtg gcaaaatggt ggttttagac 1681 aagctgctcc ctaagttaaa agaacaaggt tcacgagtac taatcttcag tcaaatgaca 1741 agggtattgg acattttgga agattattgc atgtggagaa attatgagta ctgcaggttg 1801 gatggtcaga caccccatga tgagagacaa gactccatca atgcatacaa tgaaccaaac 1861 agcacaaagt ttgttttcat gttaagcacg cgtgctggtg gtcttggcat caatcttgcg 1921 actgctgatg tagtaatttt gtatgattct gattggaatc cccaagtaga tcttcaggct 1981 atggaccgag cacatagaat tgggcagact aagacagtca gagtgttccg ctttataact 2041 gataacactg tagaagaaag aatagtagaa cgtgctgaga tgaaactcag actggattca 2101 atagtcattc aacaagggag gcttgtggat cagaatctga acaaaattgg gaaagatgaa 2161 atgcttcaaa tgattagaca tggagcaaca catgtgtttg cttcaaagga aagtgagatc 2221 actgatgaag atatcgatgg tattttggaa agaggtgcaa agaagactgc agagatgaat 2281 gaaaagctct ccaagatggg cgaaagttca cttagaaact ttacaatgga tacagagtca 2341 agtgtttata acttcgaagg agaagactat agagaaaaac aaaagattgc attcacagag 2401 tggattgaac cacctaaacg agaaagaaaa gccaactatg ccgttgatgc atatttcagg 2461 gaagctcttc gtgttagtga acctaaagca cccaaggctc ctcgacctcc aaaacaaccc 2521 aatgttcagg atttccagtt ctttcctcca cgtttatttg aattactgga aaaagaaatt 2581 ctgttttaca gaaaaactat tgggtacaag gtacctcgaa atcctgagct gcctaacgca 2641 gcacaggcac aaaaagaaga acagcttaaa attgatgaag ctgaatccct taatgatgaa 2701 gagttagagg aaaaagagaa gcttctaaca cagggattta ccaattggaa taagagagat 2761 tttaaccagt ttatcaaagc taatgagaag tggggtcgtg atgatattga aaatatagca 2821 agagaagtag aaggcaaaac tccagaagaa gtcattgaat attcagctgt gttttgggaa 2881 aggtgcaacg agctccagga catagagaag attatggctc agattgaaag gggagaggcg 2941 agaattcaaa gaagaataag catcaagaaa gcacttgaca caaagattgg acggtacaaa 3001 gcaccttttc atcagctgag aatatcatat ggtactaaca aaggaaaaaa ctatactgaa 3061 gaagaagatc gttttctgat ttgtatgctt cacaaacttg gatttgacaa agaaaatgtt 3121 tatgatgaat tgcgacagtg tattcgcaac tctcctcagt tcagatttga ctggtttctt 3181 aagtccagaa ctgcaatgga gctccagagg agatgtaata ccttaattac tttgattgaa 3241 agagaaaaca tggaactaga agaaaaggag aaggcagaga aaaagaaacg aggaccaaag 3301 ccttcaacac agaaacgtaa aatggatggc gcacctgatg gtcgaggaag aaaaaagaag 3361 ctgaaactat gaatatgttt ttgtttcata atcactaact ttaaaccagt agttctttaa 3421 tttacgggtc ttcataagat gtactgtaca atgctcaatt gttatgtcat ttaaagacat 3481 caggttcatc tgtttactga gctagaaaca tagtatgtag tttcactttt ttaaatgcaa 3541 cagctgtgct gaaatttttt tatcattaac acttgaagta ataaaatagg cttcatttat 3601 taaaaaaaaa aaaaaaa //