LOCUS BC023144 3617 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a, member 5, mRNA (cDNA clone
MGC:17104 IMAGE:4340921), complete cds.
ACCESSION BC023144
VERSION BC023144.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3617)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3617)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21071057.
FEATURES Location/Qualifiers
source 1..3617
/db_xref="H-InvDB:HIT000039699"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17104 IMAGE:4340921"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3617
/gene="SMARCA5"
/gene_synonym="hISWI"
/gene_synonym="hSNF2H"
/gene_synonym="ISWI"
/gene_synonym="SNF2H"
/gene_synonym="WCRF135"
/db_xref="GeneID:8467"
/db_xref="HGNC:HGNC:11101"
/db_xref="MIM:603375"
CDS 214..3372
/gene="SMARCA5"
/gene_synonym="hISWI"
/gene_synonym="hSNF2H"
/gene_synonym="ISWI"
/gene_synonym="SNF2H"
/gene_synonym="WCRF135"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
/protein_id="AAH23144.1"
/db_xref="GeneID:8467"
/db_xref="HGNC:HGNC:11101"
/db_xref="MIM:603375"
/translation="MSSAAEPPPPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQA
VASAASAGPADAEMEEIFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELF
AHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSK
ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISL
LGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLL
PGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLL
LTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFL
LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNIL
MQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQM
TRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI
NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMK
LRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDIDGILERGA
KKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKA
NYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGY
KVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKA
NEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRR
ISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDE
LRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKP
STQKRKMDGAPDGRGRKKKLKL"
BASE COUNT 1211 a 678 c 834 g 894 t
ORIGIN
1 cctagagccc cgcggaagag cagaacgttt gggagtgtgc agctcctggg cccggctcag
61 gcccgtcgcg gaggcgcggc gcaggggagc gctcgggtgg gagtctcgct cctccaccag
121 tttattgcga cgtagcatcc aggcctaggc ctccccgtcc atccccgccg gactcgggcc
181 tctggcagca gcgggtgacg cagacggaac atcatgtcgt ccgcggccga gcctccgcca
241 cccccgcctc ccgagagcgc gccttccaag cccgcagcct cgatcgccag cggcgggagc
301 aacagcagca acaaaggcgg ccccgaaggc gtcgcggcgc aggcggttgc gtctgcggcc
361 agcgctggtc ccgcagacgc cgagatggag gaaatatttg atgatgcgtc acctggaaag
421 caaaaggaaa tccaagaacc agatcctacc tatgaagaaa aaatgcaaac tgaccgggca
481 aatagattcg agtatttatt aaagcagaca gaactttttg cacatttcat tcaacctgct
541 gctcagaaga ctccaacttc acctttgaag atgaaaccag ggcgcccacg aataaaaaaa
601 gatgagaagc agaacttact atccgttggc gattaccgac accgtagaac agagcaagag
661 gaggatgaag agctattaac agaaagctcc aaagcaacca atgtttgcac tcgatttgaa
721 gactctccat cgtatgtaaa atggggtaaa ctgagagatt atcaggtccg aggattaaac
781 tggctcattt ctttgtatga gaatggcatc aatggtatcc ttgcagatga aatgggccta
841 ggaaagactc ttcaaacaat ttctcttctt gggtacatga aacattatag aaacattcct
901 gggcctcata tggttttggt tcctaagtct acattacaca actggatgag tgaattcaag
961 agatgggtac caacacttag atctgtttgt ttgataggag ataaagaaca aagagctgct
1021 tttgtcagag acgttttatt accgggagaa tgggatgtat gtgtaacatc ttatgaaatg
1081 cttattaaag agaagtctgt gttcaaaaaa tttaattgga gatacttagt aatagatgaa
1141 gctcacagga tcaaaaatga aaaatctaag ttgtcagaaa tagtgaggga attcaagact
1201 acaaatagac tattattaac tggaacacct cttcagaaca acttgcatga gctgtggtca
1261 cttcttaact ttctgttgcc agatgtgttt aattcagcag atgactttga ttcctggttt
1321 gatacaaaca actgccttgg ggatcaaaaa ctagttgaga ggcttcatat ggttttgcgt
1381 ccattcctcc ttcgtcgaat taaggctgat gttgaaaaga gtttgcctcc aaagaaggaa
1441 gtaaaaatct atgtgggcct cagcaaaatg caaagggaat ggtatactcg gatattaatg
1501 aaggatatag atatactcaa ctcagcaggc aagatggaca aaatgaggtt attgaacatc
1561 ctaatgcagt tgagaaaatg ttgtaatcat ccatatctct ttgatggagc agaacctggt
1621 ccaccttata caacagatat gcatctagta accaacagtg gcaaaatggt ggttttagac
1681 aagctgctcc ctaagttaaa agaacaaggt tcacgagtac taatcttcag tcaaatgaca
1741 agggtattgg acattttgga agattattgc atgtggagaa attatgagta ctgcaggttg
1801 gatggtcaga caccccatga tgagagacaa gactccatca atgcatacaa tgaaccaaac
1861 agcacaaagt ttgttttcat gttaagcacg cgtgctggtg gtcttggcat caatcttgcg
1921 actgctgatg tagtaatttt gtatgattct gattggaatc cccaagtaga tcttcaggct
1981 atggaccgag cacatagaat tgggcagact aagacagtca gagtgttccg ctttataact
2041 gataacactg tagaagaaag aatagtagaa cgtgctgaga tgaaactcag actggattca
2101 atagtcattc aacaagggag gcttgtggat cagaatctga acaaaattgg gaaagatgaa
2161 atgcttcaaa tgattagaca tggagcaaca catgtgtttg cttcaaagga aagtgagatc
2221 actgatgaag atatcgatgg tattttggaa agaggtgcaa agaagactgc agagatgaat
2281 gaaaagctct ccaagatggg cgaaagttca cttagaaact ttacaatgga tacagagtca
2341 agtgtttata acttcgaagg agaagactat agagaaaaac aaaagattgc attcacagag
2401 tggattgaac cacctaaacg agaaagaaaa gccaactatg ccgttgatgc atatttcagg
2461 gaagctcttc gtgttagtga acctaaagca cccaaggctc ctcgacctcc aaaacaaccc
2521 aatgttcagg atttccagtt ctttcctcca cgtttatttg aattactgga aaaagaaatt
2581 ctgttttaca gaaaaactat tgggtacaag gtacctcgaa atcctgagct gcctaacgca
2641 gcacaggcac aaaaagaaga acagcttaaa attgatgaag ctgaatccct taatgatgaa
2701 gagttagagg aaaaagagaa gcttctaaca cagggattta ccaattggaa taagagagat
2761 tttaaccagt ttatcaaagc taatgagaag tggggtcgtg atgatattga aaatatagca
2821 agagaagtag aaggcaaaac tccagaagaa gtcattgaat attcagctgt gttttgggaa
2881 aggtgcaacg agctccagga catagagaag attatggctc agattgaaag gggagaggcg
2941 agaattcaaa gaagaataag catcaagaaa gcacttgaca caaagattgg acggtacaaa
3001 gcaccttttc atcagctgag aatatcatat ggtactaaca aaggaaaaaa ctatactgaa
3061 gaagaagatc gttttctgat ttgtatgctt cacaaacttg gatttgacaa agaaaatgtt
3121 tatgatgaat tgcgacagtg tattcgcaac tctcctcagt tcagatttga ctggtttctt
3181 aagtccagaa ctgcaatgga gctccagagg agatgtaata ccttaattac tttgattgaa
3241 agagaaaaca tggaactaga agaaaaggag aaggcagaga aaaagaaacg aggaccaaag
3301 ccttcaacac agaaacgtaa aatggatggc gcacctgatg gtcgaggaag aaaaaagaag
3361 ctgaaactat gaatatgttt ttgtttcata atcactaact ttaaaccagt agttctttaa
3421 tttacgggtc ttcataagat gtactgtaca atgctcaatt gttatgtcat ttaaagacat
3481 caggttcatc tgtttactga gctagaaaca tagtatgtag tttcactttt ttaaatgcaa
3541 cagctgtgct gaaatttttt tatcattaac acttgaagta ataaaatagg cttcatttat
3601 taaaaaaaaa aaaaaaa
//