LOCUS BC022938 3306 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens brevican, mRNA (cDNA clone MGC:24965 IMAGE:4932894), complete cds. ACCESSION BC022938 VERSION BC022938.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3306) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3306) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 29 Row: n Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38372930. FEATURES Location/Qualifiers source 1..3306 /db_xref="H-InvDB:HIT000039681" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:24965 IMAGE:4932894" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3306 /gene="BCAN" /gene_synonym="BEHAB" /gene_synonym="CSPG7" /gene_synonym="MGC13038" /db_xref="GeneID:63827" /db_xref="HGNC:HGNC:23059" /db_xref="MIM:600347" CDS 149..2884 /gene="BCAN" /gene_synonym="BEHAB" /gene_synonym="CSPG7" /gene_synonym="MGC13038" /codon_start=1 /product="brevican" /protein_id="AAH22938.1" /db_xref="GeneID:63827" /db_xref="HGNC:HGNC:23059" /db_xref="MIM:600347" /translation="MAQLFLPLLAALVLAQAPAALADVLEGDSSEDRAFRVRIAGDAP LQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRGREAEVLVARGVRVKVNE AYRFRVALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFL YREGSARYAFSFSGTQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQ TPREACYGDMDGFPGVRNYGVVDPDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAY CQERGAEIATTGQLYAAWDGGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFL FPNQTGFPNKHSRFNVYCFRDSAQPSAIPEASNPASNPASDGLEAIVTVTETLEELQL PQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEFETQSMVPPTGFSEEEG KALEEEEKYEDEEEKEEEEEEEEVEDEALWAWPSELSSPGPEASLPTEPAAQEESLSQ APARAVLQPGASPLPDGESEASRPPRVHGPPTETLPTPRERNLASPSPSTLVEAREVG EATGGPELSGVPRGESEETGSSEGAPSLLPATRAPEGTRELEAPSEDNSGRTAPAGTS VQAQPVLPTDSASRGGVAVVPASGDCVPSPCHNGGTCLEEEEGVRCLCLPGYGGDLCD VGLRFCNPGWDAFQGACYKHFSTRRSWEEAETQCRMYGAHLASISTPEEQDFINNRYR EYQWIGLNDRTIEGDFLWSDGVPLLYENWNPGQPDSYFLSGENCVVMVWHDQGQWSDV PCNYHLSYTCKMGLVSCGPPPELPLAQVFGRPRLRYEVDTVLRYRCREGLAQRNLPLI RCQENGRWEAPQISCVPRRPARALHPEEDPEGRQGRLLGRWKALLIPPSSPMPGP" BASE COUNT 685 a 1030 c 1007 g 584 t ORIGIN 1 gccccagcct ctcctcacgc tcgcgcagtc tccgccgcag tctcagctgc agctgcagga 61 ctgagccgtg cacccggagg agacccccgg aggaggcgac aaacttcgca gtgccgcgac 121 ccaaccccag ccctgggtag cctgcagcat ggcccagctg ttcctgcccc tgctggcagc 181 cctggtcctg gcccaggctc ctgcagcttt agcagatgtt ctggaaggag acagctcaga 241 ggaccgcgct tttcgcgtgc gcatcgcggg cgacgcgcca ctgcagggcg tgctcggcgg 301 cgccctcacc atcccttgcc acgtccacta cctgcggcca ccgccgagcc gccgggctgt 361 gctgggctct ccgcgggtca agtggacttt cctgtcccgg ggccgggagg cagaggtgct 421 ggtggcgcgg ggagtgcgcg tcaaggtgaa cgaggcctac cggttccgcg tggcactgcc 481 tgcgtaccca gcgtcgctca ccgacgtctc cctggcgctg agcgagctgc gccccaacga 541 ctcaggtatc tatcgctgtg aggtccagca cggcatcgat gacagcagcg acgctgtgga 601 ggtcaaggtc aaaggggtcg tctttctcta ccgagagggc tctgcccgct atgctttctc 661 cttttctggg acccaggagg cctgtgcccg cattggagcc cacatcgcca ccccggagca 721 gctctatgcc gcctaccttg ggggctatga gcaatgtgat gctggctggc tgtcggatca 781 gaccgtgagg tatcccatcc agaccccacg agaggcctgt tacggagaca tggatggctt 841 ccccggggtc cggaactatg gtgtggtgga cccggatgac ctctatgatg tgtactgtta 901 tgctgaagac ctaaatggag aactgttcct gggtgaccct ccagagaagc tgacattgga 961 ggaagcacgg gcgtactgcc aggagcgggg tgcagagatt gccaccacgg gccaactgta 1021 tgcagcctgg gatggtggcc tggaccactg cagcccaggg tggctagctg atggcagtgt 1081 gcgctacccc atcgtcacac ccagccagcg ctgtggtggg ggcttgcctg gtgtcaagac 1141 tctcttcctc ttccccaacc agactggctt ccccaataag cacagccgct tcaacgtcta 1201 ctgcttccga gactcggccc agccttctgc catccctgag gcctccaacc cagcctccaa 1261 cccagcctct gatggactag aggctatcgt cacagtgaca gagaccctgg aggaactgca 1321 gctgcctcag gaagccacag agagtgaatc ccgtggggcc atctactcca tccccatcat 1381 ggaggacgga ggaggtggaa gctccactcc agaagaccca gcagaggccc ctaggacgct 1441 cctagaattt gaaacacaat ccatggtacc gcccacgggg ttctcagaag aggaaggtaa 1501 ggcattggag gaagaagaga aatatgaaga tgaagaagag aaagaggagg aagaagaaga 1561 ggaggaggtg gaggatgagg ctctgtgggc atggcccagc gagctcagca gcccgggccc 1621 tgaggcctct ctccccactg agccagcagc ccaggaggag tcactctccc aggcgccagc 1681 aagggcagtc ctgcagcctg gtgcatcacc acttcctgat ggagagtcag aagcttccag 1741 gcctccaagg gtccatggac cacctactga gactctgccc actcccaggg agaggaacct 1801 agcatcccca tcaccttcca ctctggttga ggcaagagag gtgggggagg caactggtgg 1861 tcctgagcta tctggggtcc ctcgaggaga gagcgaggag acaggaagct ccgagggtgc 1921 cccttccctg cttccagcca cacgggcccc tgagggtacc agggagctgg aggccccctc 1981 tgaagataat tctggaagaa ctgccccagc agggacctca gtgcaggccc agccagtgct 2041 gcccactgac agcgccagcc gaggtggagt ggccgtggtc cccgcatcag gtgactgtgt 2101 ccccagcccc tgccacaatg gtgggacatg cttggaggag gaggaagggg tccgctgcct 2161 atgtctgcct ggctatgggg gggacctgtg cgatgttggc ctccgcttct gcaaccccgg 2221 ctgggacgcc ttccagggcg cctgctacaa gcacttttcc acacgaagga gctgggagga 2281 ggcagagacc cagtgccgga tgtacggcgc gcatctggcc agcatcagca cacccgagga 2341 acaggacttc atcaacaacc ggtaccggga gtaccagtgg atcggactca acgacaggac 2401 catcgaaggc gacttcttgt ggtcggatgg cgtccccctg ctctatgaga actggaaccc 2461 tgggcagcct gacagctact tcctgtctgg agagaactgc gtggtcatgg tgtggcatga 2521 tcagggacaa tggagtgacg tgccctgcaa ctaccacctg tcctacacct gcaagatggg 2581 gctggtgtcc tgtgggccgc caccggagct gcccctggct caagtgttcg gccgcccacg 2641 gctgcgctat gaggtggaca ctgtgcttcg ctaccggtgc cgggaaggac tggcccagcg 2701 caatctgccg ctgatccgat gccaagagaa cggtcgttgg gaggcccccc agatctcctg 2761 tgtgcccaga agacctgccc gagctctgca cccagaggag gacccagaag gacgtcaggg 2821 gaggctactg ggacgctgga aggcgctgtt gatcccccct tccagcccca tgccaggtcc 2881 ctagggggca aggccttgaa cactgccggc cacagcactg ccctgtcacc caaattttcc 2941 ctcacaccct gcgctcccgc caccacagga agtgacaaca tgacgagggg tggtactgga 3001 gtccaggtga cagttcctga aggggcttct gggaaatacc taggaggctc cagcccagcc 3061 caggccctct ccccctaccc tgggcaccag atcttccatc agggccggag taaatcccta 3121 agtgcctcaa ctgccctctc cctggcagcc atcttgtccc ctctattcct ctagggagca 3181 ctgtgcccac tctttctggg ttttccaagg gaatgggctt gcaggatgga gtgtctgtaa 3241 aatcaacagg aaataaaact gtgtatgagc ccaggcaaaa aaaaaaaaaa aaaaaaaaaa 3301 aaaaaa //