LOCUS BC022938 3306 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens brevican, mRNA (cDNA clone MGC:24965 IMAGE:4932894),
complete cds.
ACCESSION BC022938
VERSION BC022938.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3306)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3306)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: n Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38372930.
FEATURES Location/Qualifiers
source 1..3306
/db_xref="H-InvDB:HIT000039681"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24965 IMAGE:4932894"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3306
/gene="BCAN"
/gene_synonym="BEHAB"
/gene_synonym="CSPG7"
/gene_synonym="MGC13038"
/db_xref="GeneID:63827"
/db_xref="HGNC:HGNC:23059"
/db_xref="MIM:600347"
CDS 149..2884
/gene="BCAN"
/gene_synonym="BEHAB"
/gene_synonym="CSPG7"
/gene_synonym="MGC13038"
/codon_start=1
/product="brevican"
/protein_id="AAH22938.1"
/db_xref="GeneID:63827"
/db_xref="HGNC:HGNC:23059"
/db_xref="MIM:600347"
/translation="MAQLFLPLLAALVLAQAPAALADVLEGDSSEDRAFRVRIAGDAP
LQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRGREAEVLVARGVRVKVNE
AYRFRVALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFL
YREGSARYAFSFSGTQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQ
TPREACYGDMDGFPGVRNYGVVDPDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAY
CQERGAEIATTGQLYAAWDGGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFL
FPNQTGFPNKHSRFNVYCFRDSAQPSAIPEASNPASNPASDGLEAIVTVTETLEELQL
PQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEFETQSMVPPTGFSEEEG
KALEEEEKYEDEEEKEEEEEEEEVEDEALWAWPSELSSPGPEASLPTEPAAQEESLSQ
APARAVLQPGASPLPDGESEASRPPRVHGPPTETLPTPRERNLASPSPSTLVEAREVG
EATGGPELSGVPRGESEETGSSEGAPSLLPATRAPEGTRELEAPSEDNSGRTAPAGTS
VQAQPVLPTDSASRGGVAVVPASGDCVPSPCHNGGTCLEEEEGVRCLCLPGYGGDLCD
VGLRFCNPGWDAFQGACYKHFSTRRSWEEAETQCRMYGAHLASISTPEEQDFINNRYR
EYQWIGLNDRTIEGDFLWSDGVPLLYENWNPGQPDSYFLSGENCVVMVWHDQGQWSDV
PCNYHLSYTCKMGLVSCGPPPELPLAQVFGRPRLRYEVDTVLRYRCREGLAQRNLPLI
RCQENGRWEAPQISCVPRRPARALHPEEDPEGRQGRLLGRWKALLIPPSSPMPGP"
BASE COUNT 685 a 1030 c 1007 g 584 t
ORIGIN
1 gccccagcct ctcctcacgc tcgcgcagtc tccgccgcag tctcagctgc agctgcagga
61 ctgagccgtg cacccggagg agacccccgg aggaggcgac aaacttcgca gtgccgcgac
121 ccaaccccag ccctgggtag cctgcagcat ggcccagctg ttcctgcccc tgctggcagc
181 cctggtcctg gcccaggctc ctgcagcttt agcagatgtt ctggaaggag acagctcaga
241 ggaccgcgct tttcgcgtgc gcatcgcggg cgacgcgcca ctgcagggcg tgctcggcgg
301 cgccctcacc atcccttgcc acgtccacta cctgcggcca ccgccgagcc gccgggctgt
361 gctgggctct ccgcgggtca agtggacttt cctgtcccgg ggccgggagg cagaggtgct
421 ggtggcgcgg ggagtgcgcg tcaaggtgaa cgaggcctac cggttccgcg tggcactgcc
481 tgcgtaccca gcgtcgctca ccgacgtctc cctggcgctg agcgagctgc gccccaacga
541 ctcaggtatc tatcgctgtg aggtccagca cggcatcgat gacagcagcg acgctgtgga
601 ggtcaaggtc aaaggggtcg tctttctcta ccgagagggc tctgcccgct atgctttctc
661 cttttctggg acccaggagg cctgtgcccg cattggagcc cacatcgcca ccccggagca
721 gctctatgcc gcctaccttg ggggctatga gcaatgtgat gctggctggc tgtcggatca
781 gaccgtgagg tatcccatcc agaccccacg agaggcctgt tacggagaca tggatggctt
841 ccccggggtc cggaactatg gtgtggtgga cccggatgac ctctatgatg tgtactgtta
901 tgctgaagac ctaaatggag aactgttcct gggtgaccct ccagagaagc tgacattgga
961 ggaagcacgg gcgtactgcc aggagcgggg tgcagagatt gccaccacgg gccaactgta
1021 tgcagcctgg gatggtggcc tggaccactg cagcccaggg tggctagctg atggcagtgt
1081 gcgctacccc atcgtcacac ccagccagcg ctgtggtggg ggcttgcctg gtgtcaagac
1141 tctcttcctc ttccccaacc agactggctt ccccaataag cacagccgct tcaacgtcta
1201 ctgcttccga gactcggccc agccttctgc catccctgag gcctccaacc cagcctccaa
1261 cccagcctct gatggactag aggctatcgt cacagtgaca gagaccctgg aggaactgca
1321 gctgcctcag gaagccacag agagtgaatc ccgtggggcc atctactcca tccccatcat
1381 ggaggacgga ggaggtggaa gctccactcc agaagaccca gcagaggccc ctaggacgct
1441 cctagaattt gaaacacaat ccatggtacc gcccacgggg ttctcagaag aggaaggtaa
1501 ggcattggag gaagaagaga aatatgaaga tgaagaagag aaagaggagg aagaagaaga
1561 ggaggaggtg gaggatgagg ctctgtgggc atggcccagc gagctcagca gcccgggccc
1621 tgaggcctct ctccccactg agccagcagc ccaggaggag tcactctccc aggcgccagc
1681 aagggcagtc ctgcagcctg gtgcatcacc acttcctgat ggagagtcag aagcttccag
1741 gcctccaagg gtccatggac cacctactga gactctgccc actcccaggg agaggaacct
1801 agcatcccca tcaccttcca ctctggttga ggcaagagag gtgggggagg caactggtgg
1861 tcctgagcta tctggggtcc ctcgaggaga gagcgaggag acaggaagct ccgagggtgc
1921 cccttccctg cttccagcca cacgggcccc tgagggtacc agggagctgg aggccccctc
1981 tgaagataat tctggaagaa ctgccccagc agggacctca gtgcaggccc agccagtgct
2041 gcccactgac agcgccagcc gaggtggagt ggccgtggtc cccgcatcag gtgactgtgt
2101 ccccagcccc tgccacaatg gtgggacatg cttggaggag gaggaagggg tccgctgcct
2161 atgtctgcct ggctatgggg gggacctgtg cgatgttggc ctccgcttct gcaaccccgg
2221 ctgggacgcc ttccagggcg cctgctacaa gcacttttcc acacgaagga gctgggagga
2281 ggcagagacc cagtgccgga tgtacggcgc gcatctggcc agcatcagca cacccgagga
2341 acaggacttc atcaacaacc ggtaccggga gtaccagtgg atcggactca acgacaggac
2401 catcgaaggc gacttcttgt ggtcggatgg cgtccccctg ctctatgaga actggaaccc
2461 tgggcagcct gacagctact tcctgtctgg agagaactgc gtggtcatgg tgtggcatga
2521 tcagggacaa tggagtgacg tgccctgcaa ctaccacctg tcctacacct gcaagatggg
2581 gctggtgtcc tgtgggccgc caccggagct gcccctggct caagtgttcg gccgcccacg
2641 gctgcgctat gaggtggaca ctgtgcttcg ctaccggtgc cgggaaggac tggcccagcg
2701 caatctgccg ctgatccgat gccaagagaa cggtcgttgg gaggcccccc agatctcctg
2761 tgtgcccaga agacctgccc gagctctgca cccagaggag gacccagaag gacgtcaggg
2821 gaggctactg ggacgctgga aggcgctgtt gatcccccct tccagcccca tgccaggtcc
2881 ctagggggca aggccttgaa cactgccggc cacagcactg ccctgtcacc caaattttcc
2941 ctcacaccct gcgctcccgc caccacagga agtgacaaca tgacgagggg tggtactgga
3001 gtccaggtga cagttcctga aggggcttct gggaaatacc taggaggctc cagcccagcc
3061 caggccctct ccccctaccc tgggcaccag atcttccatc agggccggag taaatcccta
3121 agtgcctcaa ctgccctctc cctggcagcc atcttgtccc ctctattcct ctagggagca
3181 ctgtgcccac tctttctggg ttttccaagg gaatgggctt gcaggatgga gtgtctgtaa
3241 aatcaacagg aaataaaact gtgtatgagc ccaggcaaaa aaaaaaaaaa aaaaaaaaaa
3301 aaaaaa
//