LOCUS BC022817 1046 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens proteasome (prosome, macropain) subunit, alpha type,
4, mRNA (cDNA clone IMAGE:5421443), partial cds.
ACCESSION BC022817
VERSION BC022817.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1046)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1046)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC022817.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: n Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23110940.
FEATURES Location/Qualifiers
source 1..1046
/db_xref="H-InvDB:HIT000090672"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5421443"
/tissue_type="Pancreas, ductal carcinoma"
/clone_lib="NIH_MGC_110"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1046
/gene="PSMA4"
/gene_synonym="HC9"
/gene_synonym="MGC12467"
/gene_synonym="MGC24813"
/db_xref="GeneID:5685"
CDS <1..783
/gene="PSMA4"
/gene_synonym="HC9"
/gene_synonym="MGC12467"
/gene_synonym="MGC24813"
/codon_start=1
/product="PSMA4 protein"
/protein_id="AAH22817.2"
/db_xref="GeneID:5685"
/translation="SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLL
AAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQE
PIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKA
TCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRE
NGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK"
misc_feature 4..708
/gene="PSMA4"
/gene_synonym="HC9"
/gene_synonym="MGC12467"
/gene_synonym="MGC24813"
/note="PRE1; Region: 20S proteasome, alpha and beta
subunits [Posttranslational modification, protein
turnover, chaperones]"
/db_xref="CDD:COG0638"
BASE COUNT 357 a 179 c 227 g 283 t
ORIGIN
1 tctcgaagat atgactccag gaccactata ttttctccag aaggtcgctt ataccaagtt
61 gaatatgcca tggaagctat tggacatgca ggcacctgtt tgggaatttt agcaaatgat
121 ggtgttttgc ttgcagcaga gagacgcaac atccacaagc ttcttgatga agtctttttt
181 tctgaaaaaa tttataaact caatgaggac atggcttgca gtgtggcagg cataacttct
241 gatgctaatg ttctgactaa tgaactaagg ctcattgctc aaaggtattt attacagtat
301 caggagccaa taccttgtga gcagttggtt acagcgctgt gtgatatcaa acaagcttat
361 acacaatttg gaggaaaacg tccctttggt gtttcattgc tgtacattgg ctgggataag
421 cactatggct ttcagctcta tcagagtgac cctagtggaa attacggggg atggaaggcc
481 acatgcattg gaaataatag cgctgcagct gtgtcaatgt tgaaacaaga ctataaagaa
541 ggagaaatga ccttgaagtc agcacttgct ttagctatca aagtactaaa taagaccatg
601 gatgttagta aactctctgc tgaaaaagtg gaaattgcaa cactaacaag agagaatgga
661 aagacagtaa tcagagttct caaacaaaaa gaagtggagc agttgatcaa aaaacacgag
721 gaagaagaag ccaaagctga gcgtgagaag aaagaaaaag aacagaaaga aaaggataaa
781 tagaatcaga gattttatta ctcatttggg gcaccatttc agtgtaaaag cagtcctact
841 cttccacact aggaaggctt tacttttttt aactggtgca gtgggaaaat aggacattac
901 atactgaatt gggtccttgt catttctgtc caattgaata ctttattgta acgatgatgg
961 ttacccttca tggacgtctt aatcttccac acacatcccc tttttttgga ataaaatttg
1021 gaaaatggaa aaaaaaaaaa aaaaaa
//