LOCUS BC022812 1081 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens podoplanin, mRNA (cDNA clone MGC:39210 IMAGE:4875444),
complete cds.
ACCESSION BC022812
VERSION BC022812.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1081)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1081)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: i Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54792055.
FEATURES Location/Qualifiers
source 1..1081
/db_xref="H-InvDB:HIT000050782"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39210 IMAGE:4875444"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1081
/gene="PDPN"
/gene_synonym="GP36"
/gene_synonym="Gp38"
/gene_synonym="GP40"
/gene_synonym="HT1A-1"
/gene_synonym="OTS8"
/gene_synonym="PA2.26"
/gene_synonym="T1A"
/gene_synonym="T1A-2"
/db_xref="GeneID:10630"
/db_xref="HGNC:HGNC:29602"
/db_xref="MIM:608863"
CDS 6..722
/gene="PDPN"
/gene_synonym="GP36"
/gene_synonym="Gp38"
/gene_synonym="GP40"
/gene_synonym="HT1A-1"
/gene_synonym="OTS8"
/gene_synonym="PA2.26"
/gene_synonym="T1A"
/gene_synonym="T1A-2"
/codon_start=1
/product="podoplanin"
/protein_id="AAH22812.2"
/db_xref="GeneID:10630"
/db_xref="HGNC:HGNC:29602"
/db_xref="MIM:608863"
/translation="MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRS
SRLGLWPRCFLIFPQLRILLLGPQESNNSTGTMWKVSALLFVLGSASLWVLAEGASTG
QPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRIEDLP
TSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGIIVGVLLAI
GFIGGIIVVVMRKMSGRYSP"
BASE COUNT 294 a 281 c 270 g 236 t
ORIGIN
1 gataaatgct gactccgctc ggaaagttct caactgcaaa gtttgctgtc cggctgccta
61 gggtctggga agctcgggca ccctccctct ccggggctcc tgctcccacc cctccggccc
121 ccccaccgtc gcgctcctcc aggctgggcc tgtggccgcg gtgcttttta attttccccc
181 agctcagaat cttgctgctc ggcccccagg agagcaacaa ctcaacggga acgatgtgga
241 aggtgtcagc tctgctcttc gttttgggaa gcgcgtcgct ctgggtcctg gcagaaggag
301 ccagcacagg ccagccagaa gatgacactg agactacagg tttggaaggc ggcgttgcca
361 tgccaggtgc cgaagatgat gtggtgactc caggaaccag cgaagaccgc tataagtctg
421 gcttgacaac tctggtggca acaagtgtca acagtgtaac aggcattcgc atcgaggatc
481 tgccaacttc agaaagcaca gtccacgcgc aagaacaaag tccaagcgcc acagcctcaa
541 acgtggccac cagtcactcc acggagaaag tggatggaga cacacagaca acagttgaga
601 aagatggttt gtcaacagtg accctggttg gaatcatagt tggggtctta ctagccatcg
661 gcttcattgg tggaatcatc gttgtggtta tgcgaaaaat gtcgggaagg tactcgccct
721 aaagagctga agggttacgc cctgctgcca acgtgcttaa aaaaagaccg tttctgactc
781 tgtgccctgt ccctgagctc gtgggagaag atgacccgtg gaacacttgc ctggcccact
841 cagaatccac ggtgacctct ccgcttgcca aaataaccga aggaaagacc gttcaccaga
901 cttggctcct ctaaacattt gctgttcaaa catgtttttg aatatacatt ctataaaaga
961 ttatttgaaa gacaaaattc atagaaaatg gagcaaaact gtataaactg atttgtaact
1021 aacactggac cattggatcg atattatatg ctgtaaccat gaaaaaaaaa aaaaaaaaaa
1081 a
//