LOCUS BC022542 1906 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class
X, mRNA (cDNA clone MGC:26804 IMAGE:4797783), complete cds.
ACCESSION BC022542
VERSION BC022542.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1906)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1906)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: f Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23680884.
FEATURES Location/Qualifiers
source 1..1906
/db_xref="H-InvDB:HIT000039617"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26804 IMAGE:4797783"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1906
/gene="PIGX"
/gene_synonym="FLJ20522"
/db_xref="GeneID:54965"
/db_xref="HGNC:HGNC:26046"
CDS 243..896
/gene="PIGX"
/gene_synonym="FLJ20522"
/codon_start=1
/product="phosphatidylinositol glycan anchor biosynthesis,
class X"
/protein_id="AAH22542.1"
/db_xref="GeneID:54965"
/db_xref="HGNC:HGNC:26046"
/translation="MCSEIILRQEVLKDGFHRDLLIKVKFGESIEDLHTCRLLIKQDI
PAGLYVDPYELASLRERNITEAVMVSENFDIEAPNYLSKESEVLIYARRDSQCIDCFQ
AFLPVHCRYHRPHSEDGEASIVVNNPDLLMFCDQEFPILKCWAHSEVAAPCALDNEDI
CQWNKMKYKSVYKNVILQVPVGLTVHTSLVCSVTLLITILCSTLILVAVFKYGHFSL"
BASE COUNT 544 a 376 c 444 g 542 t
ORIGIN
1 acttggtccc agccgataaa tctggggcag cgcgcggtag gagctgcggg cggccaggcc
61 ccttcctgcg tccgcacctg gccccgcgcg cccctctcgg gcgtccggct tccggcgtcc
121 tggcggctcg ggtggcggcg gttcgggcgg ccgcctggct gctcctcggg gcggcgacgg
181 ggctcacgcg cgggcccgcc acggccttca ccgccgcgcg ctctgacgcc ggcataaggg
241 ccatgtgttc tgaaattatt ttgaggcaag aagttttgaa agatggtttc cacagagacc
301 ttttaatcaa agtgaagttt ggggaaagca ttgaggactt gcacacgtgc cgtctcttaa
361 ttaaacagga cattcctgca ggactttatg tggatccgta tgagttggct tcattacgag
421 agagaaacat aacagaggca gtgatggttt cagaaaattt tgatatagag gcccctaact
481 atttgtccaa ggagtctgaa gttctcattt atgccagacg agattcacag tgcattgact
541 gttttcaagc ctttttgcct gtgcactgcc gctatcatcg gccgcacagt gaagatggag
601 aagcctcgat tgtggtcaat aacccagatt tgttgatgtt ttgtgaccaa gagttcccga
661 ttttgaaatg ctgggctcac tcagaagtgg cagccccttg tgctttggat aatgaggata
721 tatgccaatg gaacaagatg aagtataaat cagtatataa gaatgtgatt ctacaagttc
781 cagtgggact gactgtacat acctctctag tatgttctgt gactctgctc attacaatcc
841 tgtgctctac attgatcctt gtagcagttt tcaaatatgg ccatttttcc ctataagttt
901 tatgtagtta aatgcttcct agaaacctaa ataagatcta ttaatttctg acgagaggtg
961 ttcttctaga attaattact tttatctttt gtcttcattt gtggccaaaa ttatgtttac
1021 tagaggaaat ttgggatcat tctcagctaa ttccaaaatg tagtgctcta ttgcatggat
1081 ccttggtaat cctcaagcat cagatgccat aaggggaaac ttaattctgc taaattaatg
1141 tttattttgt gagaagtgac tttatcttca tttggggtag aaaaattatt tctttatgta
1201 gtagagacaa attattctca ttttgcaagt actttcaatt taagctacaa attgagaaaa
1261 ccgttataaa taagaataaa ataggccagg cacagtggct cacacctgta atcccagcac
1321 tttgggaggc cgaggtgggc ggatcaccag aggtcaagag tttgagacca gcttggtgaa
1381 accctgtctc tactaaaaat acaaaagtta gctggggctg gtggtgggca tctgtagtcc
1441 cagctaattg gaagggtgag gcgggaggat cgcttgaacc tgggaggcgg aggttccaga
1501 gagccaagat cgcaccactg cactacagcc tgggcgacag aacgagaccc tgtctccaaa
1561 ggaaaaacaa aaaagaagaa taaaataatt tggatgaaaa tcatgtttat ttaaatagta
1621 atgtcatgag actattaaag atgtgccaga gtttcaatga aaatcattaa agtaggacag
1681 ctaagaaatt aatattaata taaaaattat tgataatctt aaattattga ttattcctta
1741 acgcactcca ttctcctttt acattttatc atgtttcttt tgaatatatg aattggcaaa
1801 ggacttgatg aaactgagta ctaagatttg gtacagagta tgtcaggaag acaactcaga
1861 ttgccatttt aaataaagtt gtacatgaac aaaaaaaaaa aaaaaa
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