LOCUS BC022392 2215 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 6 (neurotransmitter transporter,
GABA), member 13, mRNA (cDNA clone MGC:24098 IMAGE:4612245),
complete cds.
ACCESSION BC022392
VERSION BC022392.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2215)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2215)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: g Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361580.
FEATURES Location/Qualifiers
source 1..2215
/db_xref="H-InvDB:HIT000039517"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24098 IMAGE:4612245"
/tissue_type="Kidney"
/clone_lib="NIH_MGC_75"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2215
/gene="SLC6A13"
/gene_synonym="GAT-2"
/gene_synonym="GAT2"
/db_xref="GeneID:6540"
/db_xref="HGNC:HGNC:11046"
CDS 54..1862
/gene="SLC6A13"
/gene_synonym="GAT-2"
/gene_synonym="GAT2"
/codon_start=1
/product="solute carrier family 6 (neurotransmitter
transporter, GABA), member 13"
/protein_id="AAH22392.1"
/db_xref="GeneID:6540"
/db_xref="HGNC:HGNC:11046"
/translation="MDSRVSGTTSNGETKPVYPVMEKKEEDGTLERGHWNNKMEFVLS
VAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLVFLFTCGIPVFLLETALGQYTSQGGVT
AWRKICPIFEGIGYASQMIVILLNVYYIIVLAWALFYLFSSFTIDLPWGGCYHEWNTE
HCMEFQKTNGSLNGTSENATSPVIEFWERRVLKISDGIQHLGALRWELALCLLLAWVI
CYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLPGAAQGIQFYLYPNLTRLWDP
QVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCIALCFLNSGTSFVAGFAIFS
ILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGLDSQF
VCVESLVTALVDMYPHVFRKKNRREVLILGVSVVSFLVGLIMLTEGGMYVFQLFDYYA
ASGMCLLFVAIFESLCVAWVYGAKRFYDNIEDMIGYRPWPLIKYCWLFLTPAVCTATF
LFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSLYRLGTLKGPFRERIRQ
LMCPAEDLPQRNPAGPSAPATPRTSLLRLTELESHC"
BASE COUNT 440 a 630 c 612 g 533 t
ORIGIN
1 agataattct tctcccctga ctggacctct ggcagcagct tcactaaggt gggatggata
61 gcagggtctc aggcacaacc agtaatggag agacaaaacc agtgtatcca gtcatggaaa
121 agaaggagga agatggcacc ctggagcggg ggcactggaa caacaagatg gagtttgtgc
181 tgtcagtggc tggggagatc attggcttag gcaacgtctg gaggtttccc tatctctgct
241 acaaaaatgg gggaggtgcc ttcttcatcc cctacctcgt cttcctcttt acctgtggca
301 ttcctgtctt ccttctggag acagcactag gccagtacac tagccaggga ggcgtcacag
361 cctggaggaa gatctgcccc atctttgagg gcattggcta tgcctcccag atgatcgtca
421 tcctcctcaa cgtctactac atcattgtgt tggcctgggc cctgttctac ctcttcagca
481 gcttcaccat cgacctgccc tggggcggct gctaccatga gtggaacaca gaacactgta
541 tggagttcca gaagaccaac ggctccctga atggtacctc tgagaatgcc acctctcctg
601 tcatcgagtt ctgggagcgg cgggtcttga agatctctga tgggatccag cacctggggg
661 ccctgcgctg ggagctggct ctgtgcctcc tgctggcctg ggtcatctgc tacttctgca
721 tctggaaggg ggtgaagtcc acaggcaagg tggtgtactt cacggccaca tttccttacc
781 tcatgctggt ggtcctgtta attcgagggg tgacgttgcc tggggcagcc caaggaattc
841 agttttacct gtacccaaac ctcacgcgtc tgtgggatcc ccaggtgtgg atggatgcag
901 gcacccagat attcttctcc ttcgccatct gtcttgggtg cctgacagcc ctgggcagct
961 acaacaagta ccacaacaac tgctacaggg actgcatcgc cctctgcttc ctcaacagcg
1021 gcaccagctt tgtggccggc tttgccatct tctccatcct gggcttcatg tctcaggagc
1081 agggggtgcc catttctgag gtggccgagt caggccctgg cctggctttc atcgcttacc
1141 cgcgggctgt ggtgatgctg cccttctctc ctctctgggc ctgctgtttc ttcttcatgg
1201 tcgttctcct gggactggat agccagtttg tgtgtgtaga aagcctggtg acagcgctgg
1261 tggacatgta ccctcacgtg ttccgcaaga agaaccggag ggaagtcctc atccttggag
1321 tatctgtcgt ctccttcctt gtggggctga tcatgctcac agagggcgga atgtacgtgt
1381 tccagctctt tgactactat gcggccagtg gcatgtgcct cctgttcgtg gccatcttcg
1441 agtccctctg tgtggcttgg gtttacggag ccaagcgctt ctacgacaac atcgaagaca
1501 tgattgggta caggccatgg cctcttatca aatactgttg gctcttcctc acaccagctg
1561 tgtgcacagc cacctttctc ttctccctga taaagtacac tccgctgacc tacaacaaga
1621 agtacacgta cccgtggtgg ggcgatgccc tgggctggct cctggctctg tcctccatgg
1681 tctgcattcc tgcctggagc ctctacagac tcggaaccct caagggcccc ttcagagaga
1741 gaatccgtca gctcatgtgc ccagccgagg acttgcccca gcggaaccca gcaggaccct
1801 cggctcccgc cacccccagg acctcactgc tcagactcac agagctagag tctcactgct
1861 agggggcagg cccttggatg gtgcctgtgt gcctggcctt ggggatggct gtggagggaa
1921 cgtggcggaa gcagccccat gtgcttccct gcccccgacc tggagtggat aagacaagag
1981 gggtattttg gagtccacct gctgagctgg aggcctccca ctgcaacttt tcagctcagg
2041 ggttgttgaa cagatgtgaa aggccagtgc caagagtgtc cctctgagac ccttgggaag
2101 ctgggtgggg gctggtaggt ggggcgagac ttgctggctt cgggccctct catccttcat
2161 tccattaaat ccacattctt cccgcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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