LOCUS BC022375 1985 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stromal cell derived factor 4, mRNA (cDNA clone
MGC:23934 IMAGE:4839718), complete cds.
ACCESSION BC022375
VERSION BC022375.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1985)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1985)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: p Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1985
/db_xref="H-InvDB:HIT000039508"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23934 IMAGE:4839718"
/tissue_type="Prostate, adenocarcinoma."
/clone_lib="NIH_MGC_60"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1985
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
CDS 264..1352
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/codon_start=1
/product="stromal cell derived factor 4"
/protein_id="AAH22375.1"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
/translation="MVWPWVAMASRWGPLIGLAPCCLWLLGAVLLMDASARPANHSST
RERVANREENEILPPDHLNGVKLEMDGHLNRGFHQEVFLGKDLGGFDEDAEPRRSRRK
LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWD
EYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTE
EEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDD
NWVKDRKKEFEELIDSNHDGIVTAEELESYMDPMNEYNALNEAKQMIAVADENQNHHL
EPEEVLKYSEFFTGSKLVDYARSVHEEF"
BASE COUNT 419 a 615 c 620 g 331 t
ORIGIN
1 gcaccgcccc cgcccgcaag aaagatggca gtggcctgat ccgggcccgt tggcggcgtc
61 actgacgctt cgctccggtc ctcggatccc gagcgcgggg aggcagaccg actgtgagct
121 gcttgtcccc atcctgcggc cgtcctgggg acacagagcc ctccgtggtg cccggggatt
181 ggattggagc caggacctca cttcctcctc tgcccctgcc cctgcccctc ccagcacctg
241 gcccacaccc tgcagcccgc cccatggtct ggccctgggt ggcgatggcg tccaggtggg
301 gtcccctcat tggcctggct ccgtgctgcc tctggctcct gggggcagtc cttctgatgg
361 acgcgtctgc acggcctgcc aaccactcgt ccactcgaga gagagtagcc aacagggagg
421 agaatgagat cctgccccca gaccacctga acggggtgaa gctggagatg gacgggcacc
481 tcaatcgcgg cttccaccag gaggtcttcc taggcaagga cctgggtggc tttgatgagg
541 acgcggagcc gcggcggagc cggaggaagc tgatggtcat cttttccaag gtggatgtga
601 acactgaccg gaagatcagt gccaaggaga tgcagcgctg gatcatggag aagacggccg
661 agcacttcca ggaggccatg gaggagagca agacacactt ccgcgccgtg gaccctgacg
721 gggacggtca cgtgtcttgg gacgagtata aggtgaagtt tttggcgagt aaaggccata
781 gcgagaagga ggttgccgac gccatcaggc tcaacgagga actcaaagtg gacgaggaaa
841 cacaggaagt cctggagaac ctgaaggacc gctggtacca ggcggacagc ccccctgcag
901 acctgctgct gacggaggag gagttcctgt cgttcctcca ccccgagcac agccggggaa
961 tgctcaggtt catggtgaag gagatcgtcc gggacctgga ccaggacggt gacaagcagc
1021 tctctgtgcc cgagttcatc tccctgcccg tgggcaccgt ggagaaccag cagggccagg
1081 acattgacga caactgggtg aaagacagaa aaaaggagtt tgaggagctc attgactcca
1141 accacgacgg catcgtgacc gccgaggagc tggagagcta catggacccc atgaacgagt
1201 acaacgcgct gaacgaggcc aagcagatga tcgccgtcgc cgacgagaac cagaaccacc
1261 acctggagcc cgaggaggtg ctcaagtaca gcgagttctt cacgggcagc aagctggtgg
1321 actacgcgcg cagcgtgcac gaggagtttt gagcgcccgg ccgcgccccg cgccgccccc
1381 cacgcaccac cggggcggcc tcgcgggtga ctccgggctc cgtggctgtc ccggacccca
1441 cctcttccct gccgcccgcc accggccgac cgaccgcggc tgccccagtt gatgagcggc
1501 gtgtcccctc tgcagcgcgc accccggcgg ggctttggct gtgacgcggt cggggcgcgg
1561 ggctgggctg tggccccgcg gcgccgcctc ctccctggtc cctcgaaatc gtggcatctc
1621 acttctgaga acgaaatctc gcttcagtca ctctgccgaa ggcgctgacg gcatcgcggc
1681 cggaacctct gggcccggcc cctcccaggg ccgccgctcc gtgggaaaaa acagctcctc
1741 catttccttg aaaactgaac gattattaaa aatagattaa acttcgctgg aaatgagtag
1801 ccaggaagtt caggggaggg tgccgggtcc ttcccgggcc tggcgtgtcg gagccaccca
1861 ggtcccgcag ctgccgctga gaaaatgcaa atatttgttg tgacaagaat cacatacatt
1921 tactttaaat atagttgcct tttttggtca gcttcaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaa
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