LOCUS BC022317 1233 bp mRNA linear HUM 24-JAN-2005
DEFINITION Homo sapiens T cell receptor alpha locus, mRNA (cDNA clone
MGC:22624 IMAGE:4732634), complete cds.
ACCESSION BC022317
VERSION BC022317.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1233)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1233)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: h Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1233
/db_xref="H-InvDB:HIT000039465"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22624 IMAGE:4732634"
/tissue_type="Placenta"
/clone_lib="NIH_MGC_79"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1233
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TCRD"
/gene_synonym="TRA"
/gene_synonym="TRDD3"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
CDS 59..949
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TCRD"
/gene_synonym="TRA"
/gene_synonym="TRDD3"
/codon_start=1
/product="TRA@ protein"
/protein_id="AAH22317.1"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
/translation="MLFSSLLCVFVAFSYSGSSVAQKVTQAQSSVSMPVRKAVTLNCL
YETSWWSYYIFWYKQLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQ
LEDSAKYFCALGESFLPFRGNFHYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMKNGTN
VACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQH
DNKTVHSTDFEVKTDSTDHVKPKETENTKQPSKSCHKPKAIVHTEKVNMMSLTVLGLR
MLFAKTVAVNFLLTAKLFFL"
BASE COUNT 386 a 272 c 251 g 324 t
ORIGIN
1 actgaacttt gagcttcagg cagcacaact cacatttgtg caaagagcta catgccacat
61 gctgttctcc agcctgctgt gtgtatttgt ggccttcagc tactctggat caagtgtggc
121 ccagaaggtt actcaagccc agtcatcagt atccatgcca gtgaggaaag cagtcaccct
181 gaactgcctg tatgaaacaa gttggtggtc atattatatt ttttggtaca agcaacttcc
241 cagcaaagag atgattttcc ttattcgcca gggttctgat gaacagaatg caaaaagtgg
301 tcgctattct gtcaacttca agaaagcagc gaaatccgtc gccttaacca tttcagcctt
361 acagctagaa gattcagcaa agtacttttg tgctcttggg gaatccttcc tgccctttcg
421 ggggaacttc cattacaccg ataaactcat ctttggaaaa ggaacccgtg tgactgtgga
481 accaagaagt cagcctcata ccaaaccatc cgtttttgtc atgaaaaatg gaacaaatgt
541 cgcttgtctg gtgaaggaat tctaccccaa ggatataaga ataaatctcg tgtcatccaa
601 gaagataaca gagtttgatc ctgctattgt catctctccc agtgggaagt acaatgctgt
661 caagcttggt aaatatgaag attcaaattc agtgacatgt tcagttcaac acgacaataa
721 aactgtgcac tccactgact ttgaagtgaa gacagattct acagatcacg taaaaccaaa
781 ggaaactgaa aacacaaagc aaccttcaaa gagctgccat aaacccaaag ccatagttca
841 taccgagaag gtgaacatga tgtccctcac agtgcttggg ctacgaatgc tgtttgcaaa
901 gactgttgcc gtcaattttc tcttgactgc caagttattt ttcttgtaag gctgactggc
961 atgaggaagc tacactcctg aagaaaccaa aggcttacaa aaatgcatct ccttggcttc
1021 tgacttcttt gtgattcaag ttgacctgtc atagccttgt taaaatggct gctagccaaa
1081 ccactttttc ttcaaagaca acaaacccag ctcatcctcc agcttgatgg gaagacaaaa
1141 gtcctgggga aggggggttt atgtcctaac tgctttgtat gctgttttat aaagggatag
1201 aaggaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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