LOCUS BC022230 4231 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens phosphatidylinositol transfer protein, membrane-associated 1, mRNA (cDNA clone MGC:21235 IMAGE:4396491), complete cds. ACCESSION BC022230 VERSION BC022230.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4231) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4231) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 27 Row: c Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4758925. FEATURES Location/Qualifiers source 1..4231 /db_xref="H-InvDB:HIT000039416" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:21235 IMAGE:4396491" /tissue_type="Duodenum, adenocarcinoma" /clone_lib="NIH_MGC_88" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4231 /gene="PITPNM1" /gene_synonym="DRES9" /gene_synonym="NIR2" /gene_synonym="PITPNM" /gene_synonym="RDGB" /gene_synonym="RDGB1" /gene_synonym="RDGBA1" /db_xref="GeneID:9600" CDS 220..3951 /gene="PITPNM1" /gene_synonym="DRES9" /gene_synonym="NIR2" /gene_synonym="PITPNM" /gene_synonym="RDGB" /gene_synonym="RDGB1" /gene_synonym="RDGBA1" /codon_start=1 /product="PITPNM1 protein" /protein_id="AAH22230.1" /db_xref="GeneID:9600" /translation="MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILA NRPYTDGPGGSGQYTHKVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCP FVEKFSIEIETYYLPDGGQQPNVFNLSGAERRQRILDTIDIVRDAVAPGEYKAEEDPR LYHSVKTGRGPLSDDWARTAAQTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRV MLRAHRQAWCWQDEWTELSMADIRALEEETARMLAQRMAKCNTGSEGSEAQPPGKPST EARSAASNTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQHGGAVSPQSLSEWR MQNIARDSENSSEEEFFDAHEGFSDSEEVFPKEMTKWNSNDFIDAFASPVEAEGTPEP GAEAAKGIEDGAQAPRDSEGLDGAGELGAEACAVHALFLILHSGNILDSGPGDANSKQ ADVQTLSSAFEAVTRIHFPEALGHVALRLVPCPPICAAAYALVSNLSPYSHDGDSLSR SQDHIPLAALPLLATSSSRYQGAVATVIARTNQAYSAFLRSPEGAGFCGQVALIGDGV GGILGFDALCHSANAGTGSRGSSRRGSMNNELLSPEFGPVRDPLADGVEGLGRGSPEP SALPPQRIPSDMASPEPEGSQNSLQAAPATTSSWEPRRASTAFCPPAASSEAPDGPSS TARLDFKVSGFFLFGSPLGLVLALRKTVMPALEAQMRPACEQIYNLFHAADPCASRLE PLLAPKFQAIAPLTVPRYQKFPLGDGSSLLLADTLQTHSSLFLEELEMLVPSTPTSTS GAFWKGSELATDPPAQPAAPSTTSEVVKILERWWGTKRIDYSLYCPEALTAFPTVTLP HLFHASYWESADVVAFILRQVIEKERPQLAECEEPSIYSPAFPREKWQRKRTQVKIRN VTSNHRASDTVVCEGRPQVLSGRFMYGPLDVVTLTGEKVDVYIMTQPLSGKWIHFGTE VTNSSGRLTFPVPPERALGIGVYPVRMVVRGDHTYAECCLTVVARGTEAVVFSIDGSF TASVSIMGSDPKVRAGAVDVVRHWQDSGYLIVYVTGRPDMQKHRVVAWLSQHNFPHGV VSFCDGLTHDPLRQKAMFLQSLVQEVELNIVAGYGSPKDVAVYAALGLSPSQTYIVGR AVRKLQAQCQFLSDGYVAHLGQLEAGSHSHASSGPPRAALGKSSYGVAAPVDFLRKQS QLLRSRGPSQAEREGPGTPPTTLARGKARSISLKLDSEE" misc_feature 220..975 /gene="PITPNM1" /gene_synonym="DRES9" /gene_synonym="NIR2" /gene_synonym="PITPNM" /gene_synonym="RDGB" /gene_synonym="RDGB1" /gene_synonym="RDGBA1" /note="IP_trans; Region: Phosphatidylinositol transfer protein" /db_xref="CDD:pfam02121" misc_feature 2275..2856 /gene="PITPNM1" /gene_synonym="DRES9" /gene_synonym="NIR2" /gene_synonym="PITPNM" /gene_synonym="RDGB" /gene_synonym="RDGB1" /gene_synonym="RDGBA1" /note="DDHD; Region: DDHD domain. The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases. It has been shown that this domain is found in a longer C terminal region that binds to PYK2 tyrosine kinase. These proteins have been called N-terminal domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests that this region is involved in functionally important interactions in other members of this family" /db_xref="CDD:pfam02862" misc_feature 2947..3660 /gene="PITPNM1" /gene_synonym="DRES9" /gene_synonym="NIR2" /gene_synonym="PITPNM" /gene_synonym="RDGB" /gene_synonym="RDGB1" /gene_synonym="RDGBA1" /note="SMP2; Region: COG5083, SMP2, Uncharacterized protein involved in plasmid maintenance [General function prediction only]" /db_xref="CDD:COG5083" BASE COUNT 791 a 1415 c 1326 g 699 t ORIGIN 1 gcaggggcgc cggcgggcgg atcgagagga aggtcggggc catgggccgg cactgcgcct 61 cgggagggtc cggccaccgc tggaacccga ggccggggct gggggcgctc cgggctccga 121 cccacgggcc ggccggccct gcccgggctg ggtgaggggc gcccgcctca agctagagga 181 ggagcggagg ccgcgcgcgg cccgccgagc gccttcagga tgctcatcaa ggaataccac 241 attctgctgc ccatgagcct ggacgagtac caggtggccc agctctacat gatccagaaa 301 aagagccggg aggagtctag tggtgagggc agcggcgtgg agatcctggc caaccggccc 361 tacacggatg ggcccggggg cagcgggcaa tacacacaca aggtgtacca cgtgggctcc 421 cacatcccag gctggttccg ggcactgctg cccaaggctg ccctgcaggt agaagaggaa 481 tcctggaatg cctaccccta cacccgaacc cggtacacct gccctttcgt ggagaaattc 541 tccattgaaa ttgagaccta ttacctgcct gatggggggc agcagccaaa cgtcttcaac 601 ctgagcgggg ccgagaggag acagcgcatc ctggacacca tcgacatcgt gcgggatgca 661 gtggccccag gcgagtacaa agcagaagag gacccccggc tttatcactc ggtcaagacg 721 ggccgagggc cactgtctga tgactgggca cggacggcgg cacagacggg gccccttatg 781 tgtgcctata agctgtgcaa ggttgagttc cgctactggg gcatgcaagc caagatcgag 841 cagttcatcc atgatgtagg tctgcgtcgg gtgatgctgc gggcccaccg ccaggcctgg 901 tgctggcagg atgagtggac agagctgagc atggctgaca tccgggcact ggaagaggag 961 actgctcgca tgctggccca gcgcatggcc aagtgcaaca caggcagtga ggggtccgag 1021 gcccagcccc ccgggaaacc gagcaccgag gcccggtctg cggccagcaa cactggcacc 1081 cccgatgggc ctgaggcccc cccaggccca gatgcctccc ccgatgccag ctttgggaag 1141 cagtggtcct catcctcccg ttcctcctac tcatcccaac atggaggggc tgtgtctccc 1201 cagagcttgt ctgagtggcg catgcagaac attgcccgag actctgagaa cagctccgag 1261 gaagagttct ttgatgccca cgaaggcttc tcggacagtg aggaggtctt ccccaaggag 1321 atgaccaagt ggaactccaa tgacttcatt gatgcctttg cctccccagt ggaggcagag 1381 ggaacgccag agcctggagc cgaggcagct aaaggcattg aggatggggc ccaagcaccc 1441 agggactcag agggcctgga tggagccggg gagctggggg ctgaggcatg cgcagtccac 1501 gccctcttcc ttatcctgca cagcggcaac atcctggact caggccctgg agacgccaac 1561 tccaagcagg cggatgtgca gacgctgagc tccgccttcg aggccgtcac ccgcatccac 1621 ttccctgagg ccttgggcca cgtggcgctg cgactggtgc cctgtccacc catctgcgcc 1681 gccgcctatg cccttgtctc caacctgagc ccttacagcc acgatgggga cagcctgtct 1741 cgctcccaag accacattcc actggctgcc ctgccactgc tggccacctc atcctcccgc 1801 taccagggcg ccgtggccac cgtcattgcc cgcaccaacc aggcctactc agccttcctg 1861 cgctcacctg agggtgccgg cttctgtggg caggtcgcac tgattggaga tggtgttggt 1921 ggcatcctgg gctttgatgc actctgccac agtgctaacg cgggcaccgg gagtcggggc 1981 agcagccgcc gtgggagcat gaacaatgag ctgctctctc cggagtttgg cccagtgcgg 2041 gaccccctgg cagatggtgt ggaaggcctg ggtcggggca gcccagaacc ctcggccttg 2101 cctccccagc gcatccccag cgacatggcc agtcctgagc ccgagggctc tcagaacagc 2161 cttcaggcag cccccgcaac cacctcctcc tgggagcccc ggcgggcaag cacggccttc 2221 tgcccacccg ctgccagttc cgaggcacct gacggcccca gcagcactgc ccgccttgac 2281 ttcaaggtct ctggcttctt cctcttcggc tccccactgg gcctggtgct ggctctgcgc 2341 aaaactgtga tgcccgccct ggaggcccag atgcgcccag cctgtgaaca gatctacaac 2401 ctcttccacg cggccgaccc ctgcgcctca cgcctcgagc ccctgctggc cccgaagttc 2461 caggccatcg ccccactgac cgtgccccgc taccagaagt tccccctggg agatggctca 2521 tccctgctgc tggccgacac tctgcagacg cactccagcc tctttctgga ggagctggag 2581 atgctggtgc cctcaacacc cacctctact agcggtgcct tctggaaggg cagtgagttg 2641 gccactgacc ccccggccca gccagccgcc cccagcacca ccagtgaggt ggttaagatc 2701 ctggagcgct ggtgggggac caagcggatc gactactcgc tgtactgccc cgaggcgctc 2761 accgcctttc ccaccgtcac gctgccccac ctcttccacg ccagctactg ggagtccgcc 2821 gacgtggtgg cgttcatcct gcgccaggtg atcgagaagg agcggccaca gctggcggaa 2881 tgcgaggagc cgtccatcta cagcccggcc ttccccaggg agaagtggca gcgaaaacgc 2941 acgcaggtca agatccggaa cgtcacttcc aaccaccggg cgagcgacac ggtggtgtgc 3001 gagggccgcc cccaggtgct aagcgggcgc ttcatgtacg ggcccctgga cgtcgtcacg 3061 ctcactggag agaaggtgga tgtctacatc atgacgcagc cgctgtcagg caagtggatc 3121 cactttggca ccgaagtcac caatagctcg ggccgcctca ccttcccagt tcccccagaa 3181 cgcgcgctgg gcattggtgt ctaccccgtg cgcatggtgg tcaggggcga ccacacctat 3241 gccgaatgct gcctgactgt ggtggcccgc ggcacggagg ctgtggtctt cagcatcgac 3301 ggctccttca ccgccagcgt ctccatcatg ggcagcgacc ccaaggtgcg agctggcgcc 3361 gtggacgtgg tcaggcactg gcaggactcc ggctacctga tcgtgtatgt cacaggccgg 3421 ccggatatgc agaagcaccg cgtggtggca tggctgtcgc agcacaactt cccccacggc 3481 gtcgtctcct tctgcgacgg cctcacccac gacccactac gccagaaggc aatgtttctg 3541 cagagcctgg tgcaggaggt agaactgaac atcgtggccg gttatgggtc tcccaaagat 3601 gtggctgtat acgcggcgct ggggctgtcc ccgagccaga cctacatcgt gggccgtgcc 3661 gtgcggaagc tacaggcgca gtgccagttc ctgtcagacg gctatgtggc ccacctgggc 3721 cagctggaag cgggctcgca ctcgcatgcc tcctcgggac ccccgagagc tgccttgggc 3781 aagagcagct atggtgtggc tgcccccgtg gacttcctgc gcaaacagag ccagctgctt 3841 cgctcgaggg gccccagcca ggcggagcgt gagggcccgg gaacaccacc caccaccctg 3901 gcacggggca aagcacggag catcagcctg aagctggaca gcgaggagtg aggcccacac 3961 cagcctggac ctgggttatt tattgacaca cccaaggggc ccgaggggct gcgtgtggga 4021 ggctggggac ccagactttt ggccccagcg ctggcccccc cagccccaca ccctatatct 4081 ccgtgtgctc ctcggtgtta cttccctttc atatgagggg acccagcgcc ggggggaggg 4141 aggagggcgt gggcatgggc gcagaggctt ttccagtgtg tataaatcca tgaaaataaa 4201 cgccacctgc accccaaaaa aaaaaaaaaa a //