LOCUS BC022189 1930 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens chromosome 17 open reading frame 47, mRNA (cDNA clone
MGC:33599 IMAGE:4824904), complete cds.
ACCESSION BC022189
VERSION BC022189.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1930)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1930)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC022189.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: m Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..1930
/db_xref="H-InvDB:HIT000039409"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33599 IMAGE:4824904"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1930
/gene="C17orf47"
/gene_synonym="FLJ40121"
/db_xref="GeneID:284083"
/db_xref="HGNC:HGNC:26844"
CDS 183..1895
/gene="C17orf47"
/gene_synonym="FLJ40121"
/codon_start=1
/product="chromosome 17 open reading frame 47"
/protein_id="AAH22189.2"
/db_xref="GeneID:284083"
/db_xref="HGNC:HGNC:26844"
/translation="MVKTNKPGAKVAVSAQRGSEVTTNTSPQQGHGYVLASSHRSAAV
SLNPSHRRSEAAHPTTPHSASDYPRSVSLQSGPGHYAVPTPRGTETGPRTESSRHSSP
HLKSQKTQTLASHASSRQWKVSPPREEAARRGSESKSGREVGHHASSIPDAKSTHQLS
FQDQKNNLQSQILEDDPPSKVQNPQGVRVPRRILSYPKDEAVQTEPIQRITTTSEIRS
PRSPSLLEHGSSCVSADYQTAQRRVPVEESETGPYGPIPSKPKALYRNMNLDSLLKLS
VLKDSDGVHRVSARVDPESLHKYSAYPETKPSAKVLVSSQVESNVRTPIRGNSEVGRR
VTISPGVQSVEPTHHVTVPSVSEGSHKSSMFVTPEPIYKQQTQKPPEITYMSQGPTPR
YPELSQKPSIHAELELTPRPLPPRSLPRYGPDSSWWPLLNPEVETPQSQLTTPDFEPK
CSPSLDLLLSGFKIDSSPFCEDLKFQREKASLSPPSPPKEFPSWAPLSEVPQTPKHTC
KQPIQRFTAFFLDVSEEMYNRVIWWLKGLCFSLLWAHCGSLGDGRTGEEWHLCIYRAG
SFRR"
BASE COUNT 559 a 531 c 424 g 416 t
ORIGIN
1 atcaccagac agagaggtag ctaaggggat tatttgagac actcttagaa caacagccac
61 ttttgtggga gcccaagaaa cagcagcttt aaaacagggt aaatattcag gcatcattag
121 gatcctgaat acaagccagc cagtaaaata cgggatctac tcagaagggc acaatctatc
181 agatggtcaa gacaaataaa cctggggcca aggtagcggt ttcagcacag agagggtctg
241 aggttactac taacacatcc cctcagcagg gacatgggta cgttcttgcc tcaagccatc
301 gaagtgctgc agtctccctg aacccttccc accgaagatc agaagctgca catcccacca
361 ctccccattc ggcatcagac taccctcgat ctgtctccct ccagtcagga cctggacact
421 atgcagtacc cactcctcgg ggaaccgaga ctggaccaag aacagaatca tcccgccatt
481 cctctcccca tctaaagagc cagaagactc agacactggc ttcccatgct tcaagcagac
541 aatggaaagt tagtccaccc agagaggaag cagcacgaag aggcagtgag agcaagtcag
601 ggcgcgaggt cggccatcat gcttcatcaa tcccagatgc caaatctact catcagttga
661 gttttcaaga ccagaagaat aacttacaat cacaaatctt agaagatgac ccaccatcca
721 aggtccagaa cccccaagga gtcagagttc cccgtaggat tttgtcttac ccaaaggatg
781 aagcagtaca aactgagccc atccaaagaa ttacgactac tagtgagatc agatctccaa
841 ggagtccctc tctcctagag cacggaagca gctgtgtctc tgcagactat cagacagccc
901 agagaagggt ccctgtagaa gaatcagaaa caggtcctta cggtccaatt ccttcaaaac
961 ccaaggcctt gtataggaat atgaacttgg actcattgct caaactctct gtccttaaag
1021 attctgatgg tgtacaccga gtttctgcac gggtagaccc tgagtctctt cataagtatt
1081 ctgcctatcc tgaaaccaag ccctccgcaa aggtcttagt atcatcacag gtggagtcca
1141 acgtgaggac cccaatccga ggaaacagcg aggttggccg cagggtcacc atctccccag
1201 gggtacagtc agtagagcca actcaccatg tgacagttcc atcagtgtct gagggctccc
1261 acaagtcatc catgtttgtt actccagagc ccatctataa acagcaaacc caaaaacccc
1321 cagaaattac ttacatgtcc caaggaccta cacccaggta tccagaactc tcgcaaaagc
1381 cctccatcca tgcagaactg gaactgaccc ctaggccctt gcctcctcgg tccttaccta
1441 ggtacggacc tgactcctca tggtggccct tgctgaatcc tgaagttgaa acaccccaaa
1501 gccagctgac aacaccggat tttgagccta agtgctctcc ttccctagat cttttattgt
1561 ccggttttaa aatagactct agccctttct gtgaggatct gaagttccag agagagaagg
1621 caagcctatc accaccatca ccaccaaagg agtttccaag ttgggcacca ctgagtgaag
1681 tgccacagac ccccaagcac acctgcaaac aacccattca aaggtttact gctttcttcc
1741 tggatgtctc tgaggaaatg tacaatcgtg tcatctggtg gctaaaaggt ctgtgctttt
1801 ccctcctatg ggcccactgt gggagcttgg gggatgggag gacaggtgag gagtggcatc
1861 tatgtatcta cagagctggg tcgtttagga gataaatgct gggattttga cctgaaaaaa
1921 aaaaaaaaaa
//