LOCUS BC022062 3333 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens Hermansky-Pudlak syndrome 3, mRNA (cDNA clone
IMAGE:2989325), partial cds.
ACCESSION BC022062
VERSION BC022062.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3333)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3333)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 28, 2003 this sequence version replaced BC022062.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: c Column: 12.
FEATURES Location/Qualifiers
source 1..3333
/db_xref="H-InvDB:HIT000039378"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2989325"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3333
/gene="HPS3"
/gene_synonym="FLJ22704"
/gene_synonym="SUTAL"
/db_xref="GeneID:84343"
/db_xref="MIM:606118"
CDS <1..2578
/gene="HPS3"
/gene_synonym="FLJ22704"
/gene_synonym="SUTAL"
/codon_start=2
/product="HPS3 protein"
/protein_id="AAH22062.2"
/db_xref="GeneID:84343"
/db_xref="MIM:606118"
/translation="DLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLIIHIDNITPVE
VSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGISNEISQLES
DDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPDISSYVL
SDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKSVELM
SVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPVSM
DVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP
VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQ
LEPGEKAELLEAFKESCGHLGDCYTRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVE
DGLQKYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNI
NPLTAMSYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILE
PRLLIQQRKGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKD
EDTIPQLLVDFWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLI
NACSHYGLIYPWVHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSED
TIAGLSVHVLCRTRLKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELC
QRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKP
LT"
BASE COUNT 999 a 658 c 665 g 1011 t
ORIGIN
1 agaccttctc gttggctgca caaataaatt agtcttattt agtttgaagt accagatcat
61 taatgaggaa ttctcactat tggactttga acgttcttta attatacaca tagataatat
121 cactcctgtt gaggtttctt tttgtgttgg atatgttgct gtcatgtcag acttagaagt
181 cttaatcgta aaactggagt caggccctaa aaatggagag agagttcacc accatccaca
241 taagaccaac aatcgaataa gacggacaga agaaggcatc agtaatgaaa tttcacagct
301 tgagtcagat gattttgtca tctgccagaa gcccctggaa cttcttggtg aaaaaagtga
361 acagtctgga ttatctgtta cactggagtc tacgggatta gctgatgaaa aaagaaaata
421 ttcccacttt cagcacctgc tctatagacg ttttgctcct gatatttcgt cctatgtctt
481 gtctgatgac atcaagctac attccctcca gctgctaccc atttaccaga ccggttctct
541 tacgtctgat ggaaaaaatt tgtctcagga aaaagaattg ctgagtctct tttgcttttt
601 ctccttacct catgtgggct atctctacat ggttgtcaaa tctgttgaat tgatgtcagt
661 ctaccagtat cctgaaaagt ctcagcaggc agtactcacg ccacaatttt tgcacgtcat
721 tacaagtaac aacctgcagt gtttcactgt gcggtgcagt gcggcggcag ctcgtgagga
781 ggacccgtac atggacacca ccctgaaggc ttgcccacct gtcagtatgg atgtctgtgc
841 tttaagaata cagcttttca taggcttgaa agccatctgt cactttaaaa accacatcat
901 acttttgact aaagcagaac ctgaagccat tccagagaga agacagtcac ccaagaggct
961 tctttcgaga aaagatacca gtgttaaaat caaaatacct cctgtagctg aggctgggtg
1021 gaatttgtat attgtgaata cgatctcacc agtgcagctg tacaaagaga tggtagacta
1081 tagcaatacc tataagactg tcaaaaccca gagctgcatt caccttctca gtgaggctca
1141 tctgttagtg cgagctgccc tgatggatgc cagtcagctg gaacctggag agaaggcaga
1201 gcttttggaa gcatttaagg aaagctgtgg gcaccttggg gactgttaca ccaggcttga
1261 ctcccagcat tctcatctca ccttgccata ctataagatg tctggtttgt ctatggctga
1321 agttctggcc cgcacggact ggacagtaga ggatggatta cagaaatacg agagaggatt
1381 aatcttttac attaatcatt cactttatga aaacctggat gaagaattaa atgaagaatt
1441 agcagcaaaa gtggttcaga tgttttatgt ggctgagcca aagcaagtgc cccatattct
1501 ctgtagtcct tctatgaaga atattaatcc tttaactgcc atgagctatc taaggaagct
1561 ggatacttct gggttttcat cgatcttagt gacattgacc aaggcagcag tggctctgaa
1621 aatgggagat cttgacatgc acagaaatga aatgaaaagc cattcagaga tgaagttggt
1681 atgtggcttc attctggaac ctcggctgtt gattcaacag agaaagggac agattgttcc
1741 aaccgagctt gcacttcact tgaaggaaac tcagcctgga ttgcttgtgg cttcagttct
1801 gggcttgcag aagaacaaca aaattggaat tgaagaagca gattcctttt ttaaggtgct
1861 ttgtgctaag gatgaagata caattcctca gctcttggta gacttttggg aagctcagct
1921 agtggcatgt ctcccagatg tggtacttca ggaactcttt ttcaaactca catcacagta
1981 catctggaga ttgtctaaga ggcagcctcc tgacaccaca ccattgcgaa catcggagga
2041 tctgataaat gcctgtagtc attatggctt aatttatcca tgggttcacg tcgtaatatc
2101 atctgattct ttagctgata aaaattatac agaagatctt tcaaaattac agtctcttat
2161 atgtggtcct tcatttgaca tagcttccat tattccgttc ttggagccac tttcagaaga
2221 cactattgcc ggcctcagtg tccatgttct gtgtcgtaca cgcttgaaag agtatgaaca
2281 gtgcatagac atactgttag agagatgccc ggaggcagtc attccatatg ctaatcatga
2341 actgaaagaa gagaaccgga ctctgtggtg gaaaaaactg ttgcctgaac tttgtcagag
2401 aataaaatgt ggtggagaga agtatcaact ctacctgtca tcattaaaag aaacattgtc
2461 aattgttgct gtggaactag aactgaagga tttcatgaat gttctcccag aagatggtac
2521 tgcaacattt ttcttgccat atcttctcta ttgcagtcga aagaaaccat tgacttaaag
2581 gtatcatttg aaaaatacca taatggcatt tgagactgaa tttctaaaaa ttgaatgcca
2641 aagtacaagt agaggagttt tttattttat atatcacaca cacacacaca cacacacaca
2701 cacacacaca catatatgat acaaatgctt tcaggctgct taccttaccg tgtagtggta
2761 actattcact tcttaattta tgacctcaat caatttaatt gtctagaatg taaaaagtct
2821 ttaagacata agaattcctc aaagaagcca tacatttttt aaggtgggga ttgactttta
2881 ttccaaggaa caacatcagt tcactgttgt tggagacatg acaatcattt tcatcccaag
2941 aacactttaa ggaaacattt tacaagtatg cttgaaagaa tgtcactaac tggtccagaa
3001 ttttatcttc ttgatttttc cagatttctc tatgtttttg agaaagatgt taatgttttg
3061 ccatggtaaa agatttcaaa cctcattttt tttgttcctt ttcttgttac ttttaagaaa
3121 actcatgctc tgtttctctg aatcaaatga agtagaagtt tacaaagcta actttcttct
3181 tgtctagcta ttaacatgat ttgtcaaatg catgtttttt tcagccaaag ccttgtttcc
3241 atttttgttg atgtgtactc ttgctctttt agctagagtg tatgtgaaaa taaagaaata
3301 catcattgta ttcacaaaaa aaaaaaaaaa aaa
//