LOCUS BC022037 1969 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens schlafen-like 1, mRNA (cDNA clone MGC:26991
IMAGE:4826722), complete cds.
ACCESSION BC022037
VERSION BC022037.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1969)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1969)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC022037.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: o Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45267820.
FEATURES Location/Qualifiers
source 1..1969
/db_xref="H-InvDB:HIT000039367"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26991 IMAGE:4826722"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1969
/gene="SLFNL1"
/gene_synonym="FLJ23878"
/db_xref="GeneID:200172"
/db_xref="HGNC:HGNC:26313"
CDS 221..1444
/gene="SLFNL1"
/gene_synonym="FLJ23878"
/codon_start=1
/product="schlafen-like 1"
/protein_id="AAH22037.2"
/db_xref="GeneID:200172"
/db_xref="HGNC:HGNC:26313"
/translation="MTPMKRSVQTQVSEPFMESWGEESLPELPAEQSLTEYSDLEEAP
SAHTLYVGHLNPQFSVPVLACLLRDTLERLEMPVAREHIEVVRRPRKAYALVQVTVHR
DTLASLPWRLQTALEEHLILKELAASGKDLLLSEAQGPFSHREEKEEEEEDSGLSPGP
SPGSGVPLPTWPTHTLPDRPQAQQLQSCQGRPSGVCSDSAIVHQQIVGKDQLFQGAFL
GSETRNMEFKRGSGEYLSLAFKHHVRRYVCAFLNSEGGSLLVGVEDSGLVQGIRCSHR
DEDRARLLVDSILQGFKPQIFPDAYTLTFIPVISTSETSVPLKVIRLTVHTPKAQSQP
QLYQTDQGEVFLRRDGSIQGPLSASAIQEWCRQRWLVELGKLEEKMKALMMEKEQLQQ
QLQQHGPVSCTCCVL"
BASE COUNT 428 a 607 c 602 g 332 t
ORIGIN
1 aggttccctg agagctaccg gccaggggtc gggaggctat gggagctcag ggcaggcacc
61 tcccatgctc ccgcgggagc caccaggaca tgaaggcctc aggagccggg acactccctg
121 agtcctctgg gagcccttaa gccacactga gaacacagac cctgggagaa gcagccagca
181 gtgaggaatc ctggaacccc ttcccaggga gagccttccc atgaccccca tgaagagatc
241 agtgcaaaca caggtgtcag agcccttcat ggagtcctgg ggtgaggagt ccctgccgga
301 gctacccgca gagcagtccc tgacggagta ctctgacctc gaggaggctc cctcggcgca
361 cactctctat gtgggccatc tgaaccccca gttctcagtg ccggtgcttg cctgcctgct
421 gcgagacacc ctggagcggc tggagatgcc ggtggcgcgg gagcacattg aagtggtgag
481 gcggccgcgg aaggcctatg cactggtgca ggtgactgtc cacagggaca ccctggcctc
541 cctcccctgg cgcctgcaga cggccctgga ggagcaccta atcctcaagg agctggcagc
601 cagtgggaag gacctgctat tgagtgaggc ccaagggccc ttcagccaca gagaggagaa
661 ggaggaggag gaggaggaca gtggcctgag ccctggcccc agtccaggct ctggtgtccc
721 gctgcccacc tggcctacac acacgctgcc tgataggccc caggcccagc agctgcagag
781 ctgccagggc cggcccagcg gcgtgtgctc cgacagtgcc attgtgcacc agcagatcgt
841 gggcaaggac cagctcttcc agggtgcctt cctgggcagc gagacccgca atatggagtt
901 caagcggggt agcggcgagt acctcagcct ggccttcaag caccacgtgc ggcgctacgt
961 gtgcgccttc ctcaacagcg agggcggcag cctgctcgtg ggagtagagg acagcggcct
1021 ggtgcagggc atccgctgca gccaccgtga cgaggaccgc gcacgcctgc tggtggactc
1081 catcctgcag ggcttcaagc ctcagatctt tcccgatgcc tacactctca ccttcatccc
1141 tgtgatcagt acctcggaga ccagcgtccc cctcaaggtg atccgcctga ccgtgcacac
1201 ccccaaggcc cagagccagc cgcaactcta ccagacagac cagggggagg tgtttctgcg
1261 gcgcgacggg agcatccagg gcccgctgtc tgccagcgcc atccaggagt ggtgcaggca
1321 gaggtggctg gtggagctgg gcaagctgga agagaagatg aaggcgctga tgatggagaa
1381 ggagcagctc cagcagcagc tgcagcagca cgggcctgtg tcctgcacct gctgtgtcct
1441 gtgagggccc tggggagcag gcaggacggc acggcactct ccacctgaga cccagggatt
1501 tcctgtttga gtgtaaggcc aaccagtaaa gcccatgcgg gctgctgaga ggcggacagg
1561 gactccttca acatggcaca tgagcaggca cccatgtggc ttcaaccctg acagacccat
1621 ctgtgtagcc aagaaactgc tctcagccct gtccccaaat gaccttactt tcagaaagaa
1681 tgtgtaaaac cctgcccaga gctcccctag ggctaagcta taagggattg tccttctccc
1741 taaaatgctc atttggccca ggctgaggtc tgtgactcca gttggctaca cagtgccaga
1801 aaggaatctg tcatctcagg aaagcccctc aaagatggcg aggcatattt gatgactgtg
1861 gttacagggc aagaggccac cctgcagccc ccacccctga cttgctggaa cttgtgactg
1921 tcaaagctcc attaataaat tacatgcacc tggaaaaaaa aaaaaaaaa
//