LOCUS BC021962 3267 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens PHD finger protein 15, mRNA (cDNA clone MGC:11091
IMAGE:3830474), complete cds.
ACCESSION BC021962
VERSION BC021962.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3267)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3267)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC021962.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: j Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3267
/db_xref="H-InvDB:HIT000039315"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:11091 IMAGE:3830474"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3267
/gene="PHF15"
/gene_synonym="JADE2"
/gene_synonym="KIAA0239"
/db_xref="GeneID:23338"
/db_xref="HGNC:HGNC:22984"
CDS 340..2715
/gene="PHF15"
/gene_synonym="JADE2"
/gene_synonym="KIAA0239"
/codon_start=1
/product="PHF15 protein"
/protein_id="AAH21962.2"
/db_xref="GeneID:23338"
/db_xref="HGNC:HGNC:22984"
/translation="MEEKRRKYSISSDNSDTTDSHATSTSASRCSKLPSSTKSGWPRQ
NEKKPSEVFRTDLITAMKIPDSYQLSPDDYYILADPWRQEWEKGVQVPAGAEAIPEPV
VRILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLDEIDAYWLELINSELKEMERP
ELDELTLERVLEELETLCHQNMARAIETQEGLGIEYDEDVVCDVCRSPEGEDGNEMVF
CDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHV
SCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMPSCVTAFH
VTCAFDHGLEMRTILADNDEVKFKSFCQEHSDGGPRNEPTSEPTEPSQAGEDLEKVTL
RKQRLQQLEEDFYELVEPAEVAERLDLAEALVDFIYQYWKLKRKANANQPLLTPKTDE
VDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERTKHAICKLQEQIFHLQM
KLIEQDLCRAGLSTSFPIDGTFFNSWLAQSVQITAENMAMSEWPLNNGHREDPAPGLL
SEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPPPPQDGPGSRTTPDK
APKKTWGQDAGSGKGGQGPPTRKPPRRTSSHLPSSPAAGDCPILATPESPPPLAPETP
DEAASVAADSDVQVPGPAASPKPLGRLRPPRESKVTRRLPGARPDAGMGPPSAVAERP
KVSLHFDTETDGYFSDGEMSDSDVEAEDGGVQRGPREAGAEEVVRMGVLAS"
BASE COUNT 731 a 1004 c 976 g 556 t
ORIGIN
1 aacatacaca gggggttggt gaatggtgcc gaccgcggcc atcgcagttg gaggctattt
61 tttggggggg gtgagtagcg tccatggagt tactttgcgc ccactcctag cggcaccggc
121 ttaggtcctg cgggccgacc gtccccggcg gggggcgtgg ggcctgggac gccgcgggcc
181 cggccgcctc cctcgccgcg accccggatg gatgcgcgcc ccccgccctc ccgcgccggc
241 cccaggagct cccggcttcg ggagcatcct tcccgcgccg gtccctgcag cggcgcgtag
301 tcgagggcag cgcccgtcag gggggcaccg cggagcaaga tggaagagaa gaggcgaaaa
361 tactccatca gcagtgacaa ctctgacacc actgacagtc atgcgacatc tacatccgca
421 tcaagatgct ccaaactgcc cagcagcacc aagtcgggct ggccccgaca gaacgaaaag
481 aagccctccg aggttttccg gacagacttg atcacagcca tgaagatccc ggactcatac
541 cagctcagcc cggatgacta ctacatcctg gcagacccat ggcgacagga atgggagaaa
601 ggtgtgcagg tgcctgccgg ggcagaggcc atcccagagc ccgtggtgag gatcctccca
661 ccactggaag gcccccctgc ccaggcatcc ccgagcagca ccatgcttgg tgagggctcc
721 cagcctgatt ggccaggggg cagccgctat gacttggacg agattgatgc ctactggctg
781 gagctcatca actcggagct taaggagatg gagaggccgg agctggacga gctgacatta
841 gagcgtgtgc tggaggagct ggagaccctg tgccaccaga atatggccag ggccattgag
901 acgcaggagg ggctgggcat cgagtacgac gaggatgttg tctgcgacgt gtgtcgctct
961 cctgagggcg aggatggcaa cgagatggtc ttctgtgaca agtgcaacgt ctgtgtgcat
1021 caggcatgct acgggatcct caaggtgccc acgggcagct ggctgtgccg gacgtgtgcc
1081 ctgggtgtcc agccaaagtg cctgctctgc cccaagcgag gaggagcctt gaagcccact
1141 agaagtggga ccaagtgggt gcatgtcagc tgtgccctat ggattcctga ggtcagcatc
1201 ggctgcccag agaagatgga gcccatcacc aagatctcgc atatcccagc cagccgctgg
1261 gctctgtcct gcagcctctg caaggaatgc acaggcacct gcatccagtg ttccatgcct
1321 tcctgcgtca cagcgttcca tgtcacatgc gcctttgacc acggcctgga aatgcggact
1381 atattagcag acaacgatga ggtcaagttc aagtcattct gccaggagca cagtgacggg
1441 ggcccacgta atgagcccac atctgagccc acggaaccca gccaggctgg cgaggacctg
1501 gaaaaggtga ccctgcgcaa gcagcggctg cagcagctag aggaggactt ctacgagctg
1561 gtggagccgg ctgaggtggc tgagcggctg gacctggctg aggcactggt cgacttcatc
1621 taccagtact ggaagctgaa gaggaaagcc aatgccaacc agccgctgct gacccccaag
1681 accgacgagg tggacaacct ggcccagcag gagcaggacg tcctctaccg ccgcctgaag
1741 ctcttcaccc atctgcggca ggacctagag agggttagaa atctgtgcta catggtgaca
1801 aggcgcgaga gaacgaaaca cgccatctgc aaactccagg agcagatatt ccacctgcag
1861 atgaaactta ttgaacagga tctgtgtcga gcaggcctgt ccacctcatt ccccatcgat
1921 ggcaccttct tcaacagctg gctggcacag tcggtgcaga tcacagcaga gaacatggcc
1981 atgagcgagt ggccactgaa caatgggcac cgcgaggacc ctgctccagg gctgctgtca
2041 gaggaactgc tgcaggacga ggagacactg ctcagcttca tgcgggaccc ctcgctgcga
2101 cctggtgacc ctgctaggaa ggcccgaggc cgcacccgcc tgcctgccaa gaagaaacca
2161 ccaccaccac caccgcagga cgggcctggt tcacggacga ctccagacaa agcccccaag
2221 aagacctggg gccaggatgc aggcagtggc aaggggggtc aagggccacc taccaggaag
2281 ccaccacgtc ggacatcttc tcacttgccg tccagccctg cagccgggga ctgtcccatc
2341 ctagccaccc ctgaaagccc cccgccactg gcccctgaga ccccggacga ggcagcctca
2401 gtagctgctg actcagatgt ccaagtgcct ggccctgcag caagccctaa gcctttgggc
2461 cggctccggc caccccgcga gagcaaggta acccggagat tgccgggtgc caggcctgat
2521 gctgggatgg gaccaccttc agctgtggct gagaggccca aggtcagcct gcattttgac
2581 actgagactg atggctactt ctctgatggg gagatgagcg actcagatgt agaggccgag
2641 gacggtgggg tgcagcgggg tccccgggag gcaggggcag aggaggtggt ccgcatgggc
2701 gtactggcct cctaactcac ccccttccct gtcccaggcc ctgccctggt ccccccacaa
2761 ggcctcagcc cagtcacaac tgccatttcc agtctctgct gagtgtccca gaccctcgag
2821 gctgccactc cgtcgtggtt ttatttttaa tatagagaga gttttgaatt ctacactgtt
2881 gtctttcctc tgtgctggcc taggacatta ggattccttc cacggctccg gccgctagga
2941 ccctgccagg tcccgcgcac catccctgcc ctgcccacgt ggtattgctg ggctcctggc
3001 tagatgcaag caaggtggac aagagctcag gactccagcc cactgccact gggtgacaca
3061 gactgtcgtt tgggcattat ttcatggcag atgggccagt ccagggccta ccccgccttg
3121 cccccagatc ccactggggt ccatttgggg ggtcctgcta cactccaccg atccccaagg
3181 aagtataata aacgataccc agccagagtc taaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3241 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//