LOCUS BC021898 2326 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens adaptor-related protein complex 1, sigma 3 subunit,
mRNA (cDNA clone MGC:17284 IMAGE:4340257), complete cds.
ACCESSION BC021898
VERSION BC021898.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2326)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2326)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: i Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31341423
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2326
/db_xref="H-InvDB:HIT000039299"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17284 IMAGE:4340257"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2326
/gene="AP1S3"
/db_xref="GeneID:130340"
/db_xref="HGNC:HGNC:18971"
CDS 97..411
/gene="AP1S3"
/codon_start=1
/product="AP1S3 protein"
/protein_id="AAH21898.1"
/db_xref="GeneID:130340"
/db_xref="HGNC:HGNC:18971"
/translation="MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGH
RTSSFVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNTWPFA
RA"
BASE COUNT 712 a 426 c 486 g 702 t
ORIGIN
1 cacctgtcag ccgcaccggc tccagcgctc gcctctcgcc ctcgcttctc cagcgctcct
61 tgctcgcaag gcgggggagg cggcggccca gccacgatga tacatttcat attgctcttc
121 agtcgacaag ggaaattacg gctacagaaa tggtacatca ctctccctga taaagagagg
181 aagaagatca cccgggaaat tgttcagatt attctctccc gtggtcacag gacaagcagt
241 tttgttgact ggaaggagct aaaacttgtt tataaaaggt atgctagttt atatttttgc
301 tgtgcaatag aaaatcagga caatgagctc ttgacgctag agattgtgca tcgttacgtg
361 gagctgctgg acaaatattt tggaaatact tggccttttg caagagcctg aagaagtttc
421 cttgaggtct gtgagctgga tattatcttt aattttgaaa aggcttattt catcctggat
481 gagtttataa taggtgggga aattcaggaa acatccaaga aaattgctgt caaagccatt
541 gaagactctg atatgttaca ggagacaatg gaagaataca tgaacaagcc tacattttaa
601 ctggaaatct acttgaagac tccagcacta catgttatga agctgtaaat aagcaacgcc
661 tcccatccgg ttttttgatg gagcctcagg caccatgcca aaaataattt aaagggattc
721 tttgttaact aacaaagtta aagttgttta acatatttat aattactatg tgtctgtatt
781 attaaaaaaa attatgtgtc tgtgttatac tgtataggta cttgtagctc taaatgttta
841 aagtaactac cacctaaccc aacagacaat atttgtaatg tattaactcc atgttatgtt
901 tttaagctgg tttagataca ttagctgcaa ttttttttgc atttgacaca atattgtaat
961 aatccatgat tttgaatgta aagtatatat gatgtcatta atactttttc taaatgttta
1021 gttttctaaa ttgtataata attcaaaatt atgttaatag tgcagagttt atatgtaatg
1081 ctagacattt ttcatacact taatagtact gtaactgcaa ttcacataca aaatgtctga
1141 ttttaatgtg ctgaattcat ttattttttt tagaattggg attatgaaaa taaccaaaga
1201 gtatagaact taataagtgt ttttgatgcc ttagaagctg ctatcttgac tgaggtttta
1261 atttatcttt taattgaata taagggacat tccaataagg ttttctatga actatatatt
1321 tattaaggtt tatagagacc tagagataca gcatctatga cttcctttat tattctaaaa
1381 tagtatgata agaattaata gcaataataa ttattgctac tattttttaa aattcacgtt
1441 ccaagcactc ttagatgctg gaaatttcat ttcaaatatg ttttaatgta tctctaatgc
1501 atttgaagac ttattacatg gcttacttag agcatttaag attatcacag cctatatggt
1561 agattccttt ccttcttttt tcttttctta ccctttcctc cccaaagaaa agatttgctg
1621 ctgaccatta ttactgtaag tatatcacat ttgtgcttcc tggaatgaaa attctgtata
1681 accaggtcct aacagtgatc agacatatta cagggaaata gcttgtaggc cgggagtggt
1741 ggcttacacc tgtgatccca gcactttggg aggccgaggc aggtggatca cttgaggtca
1801 ggagttcgag agcagcctgg ccaatatgat gaaaccccat ctctactaaa aatacaaaaa
1861 ttaggccggg tacagtggct catgcctata attccagcac tttgggaggc agaggtgggc
1921 ggatcacaag gtcaagagat caagaccatc ctcgccaaca gggtgaaacc ccacctctat
1981 taaaaataca aaaattagcc gggagtggtg gtgcgtgcct gtagtcccag ctacttggga
2041 ggctgaggca ggagaatcgc ttgaacctgg gaggcagaag ttgcagtgag ctgagattgt
2101 gccactgcac tccagcctgg gcgacagagc gagacttcgt ctcaaacaaa caaaaaaatt
2161 agccgggcat ggtggcaggt gcctgtaatc ccagctactc agggggctga ggcaggggaa
2221 tggcttgaac ccaggaggca gaggttgcag tgagccaagg tcataccagt gcactccagg
2281 cgggtgacag agcaagactg cgtctcaaga aaaaaaaaaa aaaaaa
//