LOCUS BC021585 1503 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:32098
IMAGE:4873122), complete cds.
ACCESSION BC021585
VERSION BC021585.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1503)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1503)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: l Column: 3.
FEATURES Location/Qualifiers
source 1..1503
/db_xref="H-InvDB:HIT000039228"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32098 IMAGE:4873122"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1503
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="PP7706"
/gene_synonym="pp8857"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/db_xref="GeneID:10362"
/db_xref="HGNC:HGNC:5002"
/db_xref="MIM:605535"
CDS 277..924
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="PP7706"
/gene_synonym="pp8857"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/codon_start=1
/product="HMG20B protein"
/protein_id="AAH21585.1"
/db_xref="GeneID:10362"
/db_xref="HGNC:HGNC:5002"
/db_xref="MIM:605535"
/translation="MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMC
TEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELR
RLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL"
BASE COUNT 342 a 462 c 476 g 223 t
ORIGIN
1 gccgccgcgc cggcgggcgg caaggctccg ggccagcatg ggggcttcgt ggtgactgtc
61 aagcaagagc gcggcgaggg tccacgcgcg ggcgagaagg ggtcccacga ggaggagccg
121 gtgaagaaac gcggctggcc caagggcaag aagcggaaga agattctgcc gaatgggccc
181 aaggcaccgg tcacgggcta cgtgcgcttc ctgaacgagc ggcgcgagca gatccgcacg
241 cgccacccgg atctgccctt tcccgagatc accaagatgc tgggcgccga gtggagcaag
301 ctgcagccaa cggaaaagca gcggtacctg gatgaggccg agagagagaa gcagcagtac
361 atgaaggagc tgcgggcgta ccagcagtct gaagcctata agatgtgcac ggagaagatc
421 caggagaaga agatcaagaa agaagactcg agctctgggc tcatgaacac tctcctgaat
481 ggacacaagg gtggggactg cgatggcttc tccaccttcg atgttcccat cttcactgaa
541 gagttcttgg accaaaacaa agcgcgtgag gcggagcttc ggcgcttgcg gaagatgaat
601 gtggccttcg aggagcagaa cgcggtactg cagaggcaca cgcagagcat gagcagcgcg
661 cgcgagcgtc tggagcagga gctggcgctg gaggagcgga ggacgctggc gctgcagcag
721 cagctccagg ccgtgcgcca ggcgctcacc gccagcttcg cctcactgcc ggtgccgggc
781 acgggcgaaa cgcccacgct gggcactctg gacttctaca tggcccggct tcacggagcc
841 atcgagcgcg accccgccca gcacgagaag ctcatcgtcc gcatcaagga aatcctggcc
901 caggtcgcca gcgagcacct gtgaggagtg ggcgggccca cgatgcagag gagaagctgt
961 gggcgcggcc ctgccacacc ccaccccgtg gacgagaggc tgggggtcca ccctttgggg
1021 cctggtccca tcctgcacct tgggggctcc agccccccta aaattaaatt tctgcagcat
1081 ccctttagct ttcaatctcc ccagccccct gaacccggaa aaagcactcg ctgcgcgata
1141 cacccagaag aacctcacag ccgagggtgc ccctcctcgg aggacagcca cgcgctacac
1201 tggctctccg ggccaccccc aggacacagg gcagacgaaa cccaccccca gcacacggca
1261 ggacccccca aattactcac tacggggggc tgtgccatag gccacacagg aagctgcctt
1321 gtggggactt acctggggtg tcccccgcat gcctgtaccc cagatgggtg ggggccggct
1381 ttgcccatcc tgctctcctc cagctgaggg accctggtgg gggtggctcc ttctcactgc
1441 tggatccgga ctttttaaat aaaaacaagt aaaatttgtg ttttaaaaaa aaaaaaaaaa
1501 aaa
//